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• BLUEPRINT September 2016, ChIP-Seq for thymocyte from thymus, on Genome GRCh38

  ChIP-Seq data for 5 sample(s) for thymocyte from thymus, on Genome GRCh38. 17 run(s), 17 experiment(s), 17 alignment(s). Part of BLUEPRINT (September 2016).Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20140811/homo_sapiens/README_chipseq_analysis_ebi_20140811

  Dataset EGAD00001002947

• BLUEPRINT September 2016, ChIPmentation Acute Lymphocytic Leukemia for precursor B cell from venous blood, on Genome GRCh38

  ChIPmentation data for 5 sample(s) Acute Lymphocytic Leukemia for precursor B cell from venous blood, on Genome GRCh38. 7 run(s), 7 experiment(s), 7 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002936

• BLUEPRINT September 2016, ChIPmentation for regulatory T cell from venous blood, on Genome GRCh38

  ChIPmentation data for 2 sample(s) for regulatory T cell from venous blood, on Genome GRCh38. 14 run(s), 9 experiment(s), 9 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002942

• BLUEPRINT September 2016, ChIPmentation for conventional dendritic cell from cord blood, on Genome GRCh38

  ChIPmentation data for 1 sample(s) for conventional dendritic cell from cord blood, on Genome GRCh38. 4 run(s), 2 experiment(s), 2 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002940

• BLUEPRINT September 2016, ChIPmentation for naive B cell from tonsil, on Genome GRCh38

  ChIPmentation data for 1 sample(s) for naive B cell from tonsil, on Genome GRCh38. 1 run(s), 1 experiment(s), 1 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002937

• BLUEPRINT September 2016, ChIPmentation Acute Myeloid Leukemia for blast cell from bone marrow, on Genome GRCh38

  ChIPmentation data for 2 sample(s) Acute Myeloid Leukemia for blast cell from bone marrow, on Genome GRCh38. 12 run(s), 6 experiment(s), 6 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002935

• BLUEPRINT September 2016, ChIPmentation for germinal center B cell from tonsil, on Genome GRCh38

  ChIPmentation data for 1 sample(s) for germinal center B cell from tonsil, on Genome GRCh38. 1 run(s), 1 experiment(s), 1 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002932

• BLUEPRINT September 2016, ChIPmentation Acute Lymphocytic Leukemia for precursor B cell from bone marrow, on Genome GRCh38

  ChIPmentation data for 7 sample(s) Acute Lymphocytic Leukemia for precursor B cell from bone marrow, on Genome GRCh38. 13 run(s), 13 experiment(s), 13 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002928

• BLUEPRINT September 2016, ChIPmentation for memory B cell from venous blood, on Genome GRCh38

  ChIPmentation data for 2 sample(s) for memory B cell from venous blood, on Genome GRCh38. 6 run(s), 4 experiment(s), 4 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002923

• Contribution of Retrotransposition to Developmental Disorders

  Variants and WGS data for Gardner et al. 2018 (biorxiv 471375). One VCF each for Alu, L1, and SVA. Flat text file and WGS for processed pseudogenes.

  Dataset EGAD00001004586

• RNA Sequencing datasets - Project "Multi-omics analysis of Parkinson’s disease midbrains"

  The dataset contains FASTQ files referring to the study "Multi-omics analysis of Parkinson’s disease midbrains". For this project, RNA was isolated from human postmortem midbrain tissue (PD and Control samples). Libraries were prepared with the TruSeq Small RNA library prep (Small RNA Seq) and the TruSeq Stranded Total RNA Kit (for transcriptomics), both from Illumina. Sequencing for both experimental setups was conducted in the Illumina HiSeq4000.

  Dataset EGAD00001006883

• Single-Cell ATAC and RNA Sequencing of Human Breast Cancer Reveals Salient Cancer-Specific Enhancers

  Matched single-cell chromatin accessibility sequencing (scATAC-seq) and single-cell transcriptomic sequencing (scRNA-seq) were performed for 12 human breast tumor samples, 4 normal human mammary reduction samples, and 4 human breast cancer cell lines (HCC1143, SUM149PT, MCF7, and T47D). Both scATAC-seq and scRNA-seq assays resolved the underlying cellular heterogeneity in chromatin accessibility and transcriptional output for each patient sample. In this work, we quantitatively linked variation in chromatin accessibility to gene expression across malignant and non-malignant cell types from patient samples. We then showed that our findings were recapitulated in the breast cancer cell line samples. These data will serve as an important resource for the single-cell genomics and breast cancer research communities.

  Study phs003253

• Massachusetts General Hospital Cancer Center DAC for high-throughput microfluidic enrichment from whole leukopak for CTC-based liquid biopsy

  Whole genome sequencing and whole exome sequencing data of circulating tumor cells isolated from patients with metastatic prostate cancer and liver cancer.

  Dac EGAC50000000423

• Targeted Capture DNA Sequencing

  We performed targeted capture DNA sequencing for 29 genes in extranodal NK/T-cell lymphoma, nasal type (n=67).

  Study JGAS000548

• Genome-wide genotyping and methylation data from Understanding Society

  Genome-wide genotyping and methylation data from Understanding Society. Please visit https://www.understandingsociety.ac.uk/ for further information.

  Study EGAS00001008417

• shallow Whole-Genome sequencing of 14 TNBC tumor in the MATADOR trial - for in silico spike-in experiment

  14 TNBC tumors with tumor percentage ~90% were selected for in silico spike-in experiment

  Dataset EGAD50000001863

• Single-cell Full Transcriptome RNA sequencing

  Single cell full transcriptome sequencing of CD19 CAR T-cell infusion products used for standard of care treatment for relapsed/refractory large B-cell lymphoma.

  Dataset EGAD50000000201

• Array data for oesophageal and related samples – Ganguli et al (methylation array)

  Array data for oesophageal and related samples – Ganguli et al (methylation array)

  Dataset EGAD00010002682

• RNASeq files for Newman MAP3K8 melanoma

  RNASeq files for MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas"

  Dataset EGAD00001004567

• Bam files for the whole exome sequencing from the study on Spatial homogeneity in pediatric brain tumors.

  Bam files for the whole exome sequencing from the study on Spatial homogeneity in pediatric brain tumors.

  Dataset EGAD00001001055

• Targeted sequencing using SPET for Mesothelioma.

  Targeted sequencing using SPET for Mesothelioma.

  Dataset EGAD00001001916

• RNA-Seq for PTPN1 project (EGAS00001000554)

  Fastq files corresponding to RNA-Seq dataset for PTPN1 project (EGAS00001000554)

  Dataset EGAD00001001646

• DATA FILES FOR MULLIGHAN MEF2D RNASEQ STRANDED

  DATA FILES FOR MULLIGHAN MEF2D RNASEQ STRANDED

  Dataset EGAD00001002692

• DATA FILES FOR MULLIGHAN MEF2D RNASEQ UNSTRANDED

  DATA FILES FOR MULLIGHAN MEF2D RNASEQ UNSTRANDED

  Dataset EGAD00001002704

• RNASeq files for Mullighan Leventaki ALCL Project

  RNASeq files for Mullighan Leventaki ALCL Project paper titled "Integrative molecular analysis of pediatric Anaplastic large cell lymphoma reveals subtypes with distinct immune suppression signatures."

  Dataset EGAD00001005951