Search Results - EGA European Genome-Phenome Archive

Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma - RNA

This reposiroty contains bulk RNA data generated by Blood Cancer Research Group (Ostrava, Czech Republic) as a part of publication named "Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma" published in Hemapshere. The dataset contains RNAseq samples from bone marrows.

Dataset EGAD50000001725

Bulk RNA sequencing of 36 multi-region IPMN–PDAC tumours comprising 160 sequencing runs

This dataset contains bulk RNA sequencing data generated from 36 multi-region tumour samples obtained from patients with intraductal papillary mucinous neoplasms (IPMN) and associated pancreatic ductal adenocarcinoma (PDAC). A total of 160 sequencing runs are included. Libraries were prepared from poly(A)-selected RNA and sequenced on an Illumina platform. The data are provided as raw sequencing files for downstream transcriptomic analyses.

Dataset EGAD50000002215

EGA dataset for High Grade Serous Ovarian Carcinomas Originate in the Fallopian Tube

The dataset for High Grade Serous Ovarian Carcinomas Originate in the Fallopian Tube includes 46 bam files from next-generation sequencing on the Illumina HiSeq2500. The samples analyzed include multiple lesions from nine patients, five with high grade serous ovarian carcinoma and four who are BRCA-carriers.

Dataset EGAD00001003792

Integrated Genomic, Epigenetic, and Expression Analyses of Ovarian Cancer Cell Lines

In this dataset there are 55 whole genome sequencing samples of epithelial ovarian carcinoma (bam files).

Dataset EGAD00001004532

Genome and transcriptome sequence data from a unknown – likely pancreatobiliary / intrahepatic cholangiocarcinoma in liver patient

Genome and transcriptome sequence data from a unknown – likely pancreatobiliary / intrahepatic cholangiocarcinoma in liver patient,generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001010989

Dataset for "Characterizing the cfDNA fragmentome in patients with hepatocellular carcinoma"

The dataset includes 63 BAM files from Oxford Nanopore PromethION whole-genome sequencing, generated by base calling POD5 files with Dorado (super-accurate, modified base model v5.0.0_5mCG_5hmCG@v3) and aligning reads to the hg19 reference genome.

Dataset EGAD00001015823

Genome and transcriptome sequence data from a invasive metastatic adenocarcinoma, originating from extramammary paget’s disease patient

Genome and transcriptome sequence data from a invasive metastatic adenocarcinoma, originating from extramammary paget’s disease patient,generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001015940

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Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma - RNA

Bulk RNA sequencing of 36 multi-region IPMN–PDAC tumours comprising 160 sequencing runs

EGA dataset for High Grade Serous Ovarian Carcinomas Originate in the Fallopian Tube

Integrated Genomic, Epigenetic, and Expression Analyses of Ovarian Cancer Cell Lines

Genome and transcriptome sequence data from a unknown – likely pancreatobiliary / intrahepatic cholangiocarcinoma in liver patient

Dataset for "Characterizing the cfDNA fragmentome in patients with hepatocellular carcinoma"

Genome and transcriptome sequence data from a invasive metastatic adenocarcinoma, originating from extramammary paget’s disease patient

Genome and transcriptome sequence data from a metastatic breast carcinoma patient

Genome and transcriptome sequence data from a metastatic breast carcinoma patient

Genome and transcriptome sequence data from a metastatic colorectal carcinoma patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the sigmoid colon patient

Genome and transcriptome sequence data from a metastatic melanoma patient

Genome and transcriptome sequence data from a pancreatic ductal adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic colon adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic colon adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the lung patient

Genome and transcriptome sequence data from a pancreatic adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic rectal adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic low-grade serous carcinoma of ovarian origin patient

Genome and transcriptome sequence data from a nasal vestibule squamous cell carcinoma patient

Genome and transcriptome sequence data from a pancreatic adenocarcinoma metastatic to the liver patient

Genome and transcriptome sequence data from a metastatic high-grade synovial sarcoma patient

Genome and transcriptome sequence data from a metastatic rectal carcinoma with metastasis to the liver patient

Genome and transcriptome sequence data from a metastatic colorectal adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic neuroendocrine carcinoma of unknown primary patient