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• ICGC PCAWG Dataset: CMDI-UK_PCAWG_WGS_BWA

  ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CMDI-UK.

  Dataset EGAD00001002664

• Bam files from whole exome sequencing (WES)from multiple laser microdissected regions from tumor and paired biopsies from metastatic lesions.

  In this study we characterized genomic alterations in three bladder cancer patients with metastatic disease courses. Multiple regions were procured by laser microdissection or punctures from primary tumor, lymph node metastases and from distant metastases. Data provided here consist of 35 Bam files for WES (32 Tumors and 2 blood, 1 adjacent normal)

  Dataset EGAD00001002772

• scRNA primaries

  Single cell RNA-seq for primary samples

  Dataset EGAD00001006135

• scWGS chordblood

  Single cell WGS (low pass) for chord blood samples

  Dataset EGAD00001006136

• scWGS PDX

  Single cell WGS (low pass) for PT1-derived PDX samples

  Dataset EGAD00001006137

• scWGS primaries

  Single cell WGS (low pass) for primary samples

  Dataset EGAD00001006138

• Genomic data of acute myeloid leukemia cases for integration with metabolomic analyses

  Whole exome sequencing (WES) data of paired (germline and leukemic) samples of 100 adult patients affected by acute myeloid leukemia. Targeted sequencing data of myeloid-related genes of 21 leukemia (not paired) samples from adult patients affected by acute myeloid leukemia.

  Dataset EGAD00001007941

• ctDNA whole exome genome sequencing dataset

  Dataset contains all available exome sequencing paired-end fastq files from our study "A generalizable machine learning framework for classifying DNA repair defects using ctDNA exomes"

  Dataset EGAD00001010069

• Single-cell RNA-Seq (Chromium Next GEM Single Cell 3' Reagent Kits v3.1 from 10X Genomics )

  Human data for transcriptome (scRNA-Seq) in CD34+ B cell precursors.

  Dataset EGAD00001010907

• dbGaP submission of CORECT OncoArray GWAS data

  This analysis represents the genome-wide association study results of several international case-control studies of colorectal cancer.

  Study phs001903

• McQuillin_Global_WES_Schizophrenia

  Whole Exome Sequencing of Schizophrenia cases and matched controls performed at the Broad Institute on a cohort from UCL, London, UK

  Study EGAS50000000901

• Transcriptomic landscape of C1498 cells

  We characterized the mutations and gene fusion events (at RNA level) of C1498 cells by whole transcriptome sequencing analysis.

  Study EGAS50000001674

• HLA has strongest association with IgA nephropathy in genome-wide analysis

  GWAS study of families with probands with IgA nephropathy from the UK Glomerulonephritis DNA bank

  Study EGAS00000000031

• Tumor microenvironment-induced FOXM1 regulates ovarian cancer stemness

  RNAseq from patient-derived primary tumor cells, cultured or not on organotypic cultures mimicking the tumor microenvironment

  Study EGAS50000000355

• piRNA analysis in human testis

  The dataset comprises RNAseq data of human testiculr tisue of fertile men with full spermatogenesis nd infertile men with biallelic variants in genes of the piRNA pathway.

  Dataset EGAD50000000585

• CMMRD tumors sequencing data

  Whole exome sequencing data from the tumors of individuals with constitutional mismatch repair deficiency. These are 16 tumors from the bigger study of 41 tumors in total (from 17 individuals in total).

  Dataset EGAD50000000113

• HumanMethylation450_NL

  This dataset includes IDAT files from 2,790 blood samples. The samples were profiled using the Illumina Infinium HumanMethylation450 (450k) BeadChip.

  Dataset EGAD00010001938

• AI

  Allelic imbalance (AI) region calls: start and end positions and the measured mBAF and LRR mean of each region after the BAF segmentation algorithm. Software: Illumina GenomeStudio;PennCNV v. 1.0.4;BAF segmentation v1.2.0.

  Dataset EGAD00010001926

• VIKING Health Study - Shetland 30X WGS

  30x whole genome sequencing of samples from the VIKING Health Study - Shetland. 500 DNA samples were sequenced using the Illumina HiSeq X system. FASTQ files are deposited

  Dataset EGAD00001005378

• Unraveling the genetic basis of a collagen migration defect in patients with a combined platelet dysfunction and reduced bone density

  Unraveling the genetic basis of a collagen migration defect in patients with a combined platelet dysfunction and reduced bone density

  Dataset EGAD00001000109

• KIT-dependent and -independent genomic heterogeneity of resistance in gastrointestinal stromal tumors - TORC1/2 inhibition as salvage strategy

  The mutational status of GIST analyzed with a broad sequencing approach (WES, RNAseq)

  Study EGAS00001003405

• GermCellTumour

  DNA and RNA sequencing across a number of different germ cell tumours, included mixed components within the same tumour.

  Study EGAS00001003457

• Epi_Tax_targeted_sequencing

  Sequencing of 350 cancer genes in BC samples from patients treated with either Epirubicin or Paclitaxel monotherapy in the neoadjuvant setting.

  Study EGAS00001000587

• Southern African Human Genome Programme dataset

  The SAHGP characterises the genomes of 24 individuals (8 Coloured and 16 black southeastern Bantu-speakers) using deep whole genome sequencing (WGS).

  Dataset EGAD00001003791

• Multi-omics profiling of PSCCE

  We performed whole-exome sequencing, RNA sequencing and immunohistochemistry profiling of primary small cell carcinomas of the esophagus.

  Study EGAS00001004889