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• Somatic pathogenic variants in the normal mammary gland of sporadic breast cancer patients.

  Dac EGAC00001002391

• The genomic landscape of early-stage ovarian high grade serous carcinoma Data Access Commitee

  Dac EGAC00001002547

• The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG)

  Dac EGAC00001002708

• The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG)

  Dac EGAC00001003026

• DAC Neurology UKW

  DAC of the Department of Neurology, University Hospital Würzburg (UKW), Würzburg, Germany

  Dac EGAC50000000425

• Single-cell dissection of the immune response after a myocardial infarction

  Study EGAS00001007021

• Minor intron splicing efficiency increases with the development of lethal prostate cancer

  Study EGAS00001005546

• Comprehensive Whole-Genome Sequence Annotation to Resolve the Genetic Architecture of Cerebral Palsy

  Study EGAS00001006724

• Whole genome sequencing dataset of 200 trio families from the CHILD cohort study.

  Study EGAS00001006725

• The genome-wide mutational consequences of DNA hypomethylation

  Study EGAS00001006845

• The paired FF/FFPE colon set, Exome-Seq

  Dataset EGAD00001000834

• EGAD00000000109

  Gabriel samples from the UK SEVERE cohort

  Dataset EGAD00000000109

• EGAD00000000108

  Gabriel samples from the UK AUGOSA cohort

  Dataset EGAD00000000108

• EGAD00000000107

  Gabriel samples from the multicenter occupational cohort

  Dataset EGAD00000000107

• EGAD00000000106

  Gabriel samples from the multicenter occupational cohort

  Dataset EGAD00000000106

• EGAD00000000105

  Gabriel samples from the multicenter occupational cohort

  Dataset EGAD00000000105

• EGAD00000000104

  Gabriel samples from the Russian UFA cohort

  Dataset EGAD00000000104

• EGAD00000000103

  Gabriel samples from the Russian UFA cohort

  Dataset EGAD00000000103

• EGAD00000000102

  Gabriel samples from the Russian TOMSK cohort

  Dataset EGAD00000000102

• EGAD00000000101

  Gabriel samples from the Russian TOMSK cohort

  Dataset EGAD00000000101

• EGAD00000000094

  Gabriel samples from the UK MRCA cohort

  Dataset EGAD00000000094

• EGAD00000000093

  Gabriel samples from the German MAGIS cohort

  Dataset EGAD00000000093

• EGAD00000000092

  Gabriel samples from the German MAGIS cohort

  Dataset EGAD00000000092

• EGAD00000000091

  Gabriel samples from the Russian KMSU cohort

  Dataset EGAD00000000091

• EGAD00000000090

  Gabriel samples from the Russian KMSU cohort

  Dataset EGAD00000000090

• EGAD00000000089

  Gabriel samples from the Karelia Allergy Study

  Dataset EGAD00000000089

• EGAD00000000088

  Gabriel samples from the Karelia Allergy Study

  Dataset EGAD00000000088

• EGAD00000000087

  Gabriel samples from the multicenter GAIN cohort

  Dataset EGAD00000000087

• EGAD00000000086

  Gabriel samples from the multicenter GAIN cohort

  Dataset EGAD00000000086

• EGAD00000000083

  Gabriel samples from the French EGEA Cohort

  Dataset EGAD00000000083

• EGAD00000000082

  Gabriel samples from the French EGEA Cohort

  Dataset EGAD00000000082

• EGAD00000000075

  Gabriel samples from the Swedish BAMSE Cohort

  Dataset EGAD00000000075

• EGAD00000000074

  Gabriel samples from the Swedish BAMSE Cohort

  Dataset EGAD00000000074

• EGAD00000000076

  Gabriel samples from the Australian Bussleton Cohort

  Dataset EGAD00000000076

• EGAD00000000077

  Gabriel samples from the Australian Bussleton Cohort

  Dataset EGAD00000000077

• Somatic mutations in healthy and leukemic blood progenitors reveal evolutionary mechanisms underlying childhood leukemia and differential patient outcome

  Study EGAS00001004593

• RNAseq of PC-9 and KHM-3S with and without tarceva

  Dataset EGAD00001000843

• Brain_Disease_Wellcome_Leap_Delta_Tissue_ATAC

  Single cell and spatial multi-omic atlas of glioblastoma

  Study EGAS00001008083

• Exome sequencing study of cells derived from QHJI14s04 human iPSC secondary cell stock

  Genomic abnormalities of cells used in regenerative medicine should be checked. This study evaluates variants on coding sequences of cells derived from QHJI14s04 human iPSC secondary cell stock. Here we conducted whole exome sequence of three vials from the stock.

  Study EGAS50000000934

• Human glioblastoma single cell RNA-seq from two patient, sampled at different positions within as well as outside tumor

  We performed deep single-cell RNA sequencing of two rare glioblastoma cases where tissue could be sampled from tumor core to macroscopically normal cortex. We processed two to three replicates per sample with the 10X Genomics V3.1 kits. Deep sequencing was performed to about 100,000 reads per cell on the Illumina NovaSeq 6000 platform, resulting in a total of 37 BAM files.

  Dataset EGAD50000001500

• Multiomics characterisation of the response to stimulation in Long Covid patients

  We generated 10X, droplet-based paired snRNAseq+snATACseq (Multiome) of the response to P. Aeruginosa or RPMI in patients suffering from Long Covid. In total, we included 15 patients. Single nuclei libraries are genetically multiplexed across donors, genotype files are available to enable demultiplexing. Phenotype sheets provide information of pools/donors as well as donor phenotype.

  Dataset EGAD50000000203

• Whole genome sequencing of metastatic melanomas from a patient with primary resistance to BRAF inhibition

  Here, we investigated the underlying cause of treatment failure in a patient with BRAF mutant melanoma who presented primary resistance. We used whole-genome sequencing (WGS) to characterise five metastatic tumours from a BRAF mutant melanoma patient who presented intrinsic resistance.

  Study EGAS00001000580

• Phenotypic_characterisation_of_LRRN4CL_over_expression

  This study aims to use RNAseq to identify differentially expressed transcripts in human melanoma cells that over-express the cell surface protein, LRRN4CL, relative to empty-vector control cells, to provide mechanistic insight into how LRRN4CL over-expression confers enhanced pulmonary metastatic colonisation abilities.

  Study EGAS00001003976

• ATAC-seq data from primary AML samples with t(3;8)

  Open chromatin regions in the MYC super-enhancer region were investigated by ATAC-seq in t(3;8) AML. ATAC-seq was performed as described (Buenrostro et al, 2013) with a modification in the lysis buffer (0.30 M sucrose, 10 mM Tris pH 7.5, 60 mM KCl, 15 mM NaCl, 5 mM MgCl2, 0.1 mM EGTA, 0.1% NP40, 0.15 mM Spermine, 0.5 mM Spermidine, 2 mM 6AA) to reduce mitochondrial DNA contamination.

  Dataset EGAD00001007910

• Tumor heterogeneity and acquired drug resistance in FGFR2 fusion-positive cholangiocarcinoma through rapid research autopsy

  Whole exome sequencing was performed on blood and tumor specimens (collected from biopsy or rapid research autopsy) from a patient with FGFR2 fusion positive cholangiocarcinoma.

  Study phs001830

• PDAC clinical phenotype data with CA19-9 and Lewis antigen status

  This dataset contains individual-level clinical phenotype data from patients with pancreatic ductal adenocarcinoma, including CA19-9 measurements, Lewis antigen status, and relevant clinicopathological variables. Data were generated as part of an ethically approved study and are available under controlled access.

  Dataset EGAD50000002254

• Whole genome sequencing of paired samples from primary and relapsed IDH-wt glioblastomas with matched blood controls

  This dataset contains whole genome sequencing data from 21 primary and relapsed IDH-wt glioblastomas and matched blood controls. Tumors were sequenced at a target coverage of 150x, blood controls at 80x.

  Dataset EGAD00001004563

• Whole genome sequencing of 40 gastric cancer tumours and matched normal samples from Singapore.

  Genomic DNA of tumours and matched normal gastric tissues was extracted (QIAGEN). Libraries were constructed with 300-400 bp insert length, and 101bp or 151bp paired-end sequencing was performed on Illumina Hiseq instruments

  Dataset EGAD00001004279

• Copy number profiling of tissue and plasma samples from high grade serous epithelial ovarian cancer patients

  This dataset includes 289 samples from 46 high grade serous epithelial ovarian cancer patients. Data are from both tissue samples (either primary tumor, or synchronous metastases) and circulating cell-free DNA (cfDNA) of plasma samples taken during therapy and follow-up.

  Dataset EGAD00001006422

• Genetic investigation of 12q-amplified osteosarcomas

  Genetic investigation of 12q-amplified osteosarcomas using both whole genome short- and longread and transcriptome sequencing.

  Dac EGAC50000000340