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• UKB_Genotyped 2018

  The UK BioBank directly genotyped dataset 2018

  Dataset EGAD00010001497

• HCEMM - Semmelweis University Molecular Oncohematology Research Group DAC

  Data Access Committee of the HCEMM - Semmelweis University Molecular Oncohematology Research Group

  Dac EGAC50000000091

• HPRU in Respiratory Infections DAC

  DAC to oversee data owned from the HPRU in Respiratory Infections at Imperial College London

  Dac EGAC50000000307

• TFTAK Data Access Committee

  The TFTAK Data Access Committee (TFTAK DAC) oversees access to data generated by TFTAK research projects.

  Dac EGAC50000000885

• Molecular determinants of outcomes in relapsed mantle cell lymphoma treated with ibrutinib or temsirolimus in the MCL3001 (RAY) trial

  Study EGAS00001006342

• iMED DNA methylation data

  This dataset contains the DNA methylation data of 439 samples from iMED cohort

  Dataset EGAD00010002765

• GSA_2023_hg19

  Genopyting of 45 individuals using the Illumina Global Screening Array-24 v3

  Dataset EGAD00010002707

• GSA_2020_hg38

  Genopyting of 65 individuals using the Illumina Global Screening Array-24 v2

  Dataset EGAD00010002706

• GSA_2022_hg19

  Genopyting of 45 individuals using the Illumina Global Screening Array-24 v3

  Dataset EGAD00010002705

• The study of response to EGFR Blockade in Colorectal Cancer

  Dataset EGAD00001001628

• The study of response to EGFR Blockade in Colorectal Cancer

  Dataset EGAD00001001674

• Somatic mutations in angiosarcoma

  Here we present the genomes of three secondary angiosarcomas

  Dataset EGAD00001000735

• AML-MRD

  AML-MRD: Aligned sequences used in the error modeling study

  Dataset EGAD00001005270

• The_mutational_landscape_of_recurrent_Glioblastome_multiforme

  Targeted gene screen of approx 120 patients with primary GBM and recurrent samples.

  Study EGAS00001001764

• WGS_of_Somatic_Mosaicism_of_BRCA1_Methylation_in_Malignant_and_Nonmalignant_Breast_Tissue

  WGS of Somatic Mosaicism of BRCA1 Methylation in Malignant and Nonmalignant Breast Tissue

  Study EGAS00001008235

• EMseq_of_Somatic_Mosaicism_of_BRCA1_Methylation_in_Malignant_and_Nonmalignant_Breast_Tissue

  EMseq of Somatic Mosaicism of BRCA1 Methylation in Malignant and Nonmalignant Breast Tissue

  Study EGAS00001008236

• scRNAseq data of HGSOC patients before and after treatment

  scRNAseq data of HGSOC patients before and after treatment

  Dataset EGAD50000000191

• Whole exome sequencing of bulk primary tumor (and one lymph node metastasis) and matched blood of six non-metastatic breast cancer patients

  Dataset EGAD00001002746

• RNA-Seq and WXS from 6 glioblastoma patients

  RNA-Seq and WXS from 6 glioblastoma patients

  Dataset EGAD00001003293

• IfGH-10772

  Clinical and genetic information of an individual with RVOT-VT and a KCNK2 (TREK1) gene mutation obtained after whole exome sequencing.

  Dataset EGAD00001003328

• H3Africa NEEDI SNPs and INDELs

  SNPs and INDELs of novel hereditary neurological disease genes in Mali using Beckman 8800, ABI 3730/3730xl.

  Dataset EGAD00001006295

• STAG1 and STAG2-ChIP-seq in RAD21-mutant adult acute myeloid leukemia

  STAG1 and STAG2-ChIP-seq in RAD21-mutant adult acute myeloid leukemia

  Dataset EGAD00001015361

• Single-cell RNA-seq of PBMC from 2 patients iGRAN-Low and 2 patients iGRAN-High

  Single-cell RNA-seq of PBMC from 2 patients iGRAN-Low and 2 patients iGRAN-High [Publication title] CXCL8 secreted by immature granulocytes inhibits wildtype hematopoiesis in chronic myelomonocytic leukemia

  Study EGAS50000000556

• Enhanced reduced representation bisulfite sequencing (eRRBS) on 45 multiple myeloma samples and 3 normal plasma cell

  Enhanced reduced representation bisulfite sequencing (eRRBS) on 45 multiple myeloma samples and 3 normal plasma cell. Libraries were sequenced on a HiSeqTM4000 Illumina machine using 75bp paired-end reads

  Study EGAS00001004348

• Multi-omics profiling identifies two epithelioid sarcoma molecular subtypes with distinct signaling and immune characteristics

  Bulk RNA Sequencing of 33 epithelioid sarcomas (EpS) and 3 extracranial extra-renal rhabdoid tumors (EERT) Whole-exome sequencing of 30 EpS and 3 EERT Single-cell RNA Sequencing of 8 EpS Visium Spatial Transcriptomics of 3 EpS

  Dataset EGAD50000001419

• scRNAseq and scTCRseq data from tumor-infiltrating lymphocytes

  SCRNAseq and TCRseq are performed using 10X genomics technology on lymphocytes from tumor of 8 individuals (4 different conditions and 2 replicates per condition): - ISO : isotype sample_1 - ISO_dup :isotype sample_2 aPD1 : sample anti-PD1_1 aPD1_dup :sample anti-PD1_2 aCTLA4: sample anti-CTLA4_1 aCTLA4_dup :sample anti-CTLA4_2 combo : sample_anti-PD1_anti-CTLA4_1 combo_dup : sample_anti-PD1_anti-CTLA4_2

  Dataset EGAD50000001214

• Single-cell RNA sequencing on 5063 single T cells from six hepatocellular carcinoma patients

  T cells isolated from peripheral blood, tumors and adjacent normal tissues from six hepatocellular carcinoma patients. SmartSeq2 and Tang2009 protocol were used to amplify RNA from single T cells. High depth enables simultaneously expression profiling and TCR assembling.

  Dataset EGAD00001003337

• Epigenetic profiling of colorectal cancer initiating cells (CC-ICs) and investigation of changes in transcriptome following EZH2 inhibition using RNA-seq.

  Epigenetic profiling of colorectal cancer initiating cells (CC-ICs) to identify bivalently marked genes (H3K4me3 and H3K27me3 ChIP-seq), and investigation of changes in transcriptome following EZH2 inhibition using RNA-seq.

  Dataset EGAD00001004133

• Circulating tumour DNA abundance and potential utility in de novo metastatic prostate cancer

  We set out to determine ctDNA abundance at de novo mCSPC diagnosis and whether ctDNA provides complementary clinically relevant information to a prostate biopsy. We collected and sequenced 77 plasma cell-free DNA samples from 53 newly diagnosed patients with mCSPC. Targeted sequencing was also performed on DNA from 48 diagnostic prostate tissue samples.

  Dataset EGAD00001004526

• Whole-exome sequencing of matched blood, primary GBM tumours, and patient-derived organoids

  Whole-exome sequencing (~250X coverage) of primary GBM tumours and matched patient-derived organoids and normal blood. Samples from two spatially distinct regions of seven tumours from five patients (five primary, two recurrent).

  Dataset EGAD00001007935

• Single cell atlas of human glioma

  We profiled 87 primary-recurrentpatient-matched paired GBM specimens with single-nucleus RNA and bulk-DNA sequencing and single-cell open-chromatin and spatial transcriptomics/proteomics assays. We found that recurrent GBMs are characterized by a shift to a mesenchymal phenotype in response to therapy

  Dataset EGAD00001008811

• lymphoma plasma cfRNA

  Dataset contains total RNA sequencing data from plasma of 65 different human donors: 30 diffuse large B-cell lymphoma (DLBCL) and 13 primary mediastinal large B-cell lymphoma (PMBCL) patients, and 22 cancer-free controls. Samples were sequenced on a NovaSeq 6000 and are provided in FASTQ format.

  Dataset EGAD00001010259

• Dr. Fatima Mechta-Grigoriou, PhD, DR1 Head of Stress and Cancer Laboratory Deputy Director Genetic and Biology of Cancer Dpt Institut Curie - Inserm U830

  Dac EGAC00001000581

• Exome_NanoSeq__Thyroid_

  Exome NanoSeq in thyroid from a number of donors, both healthy and with pathology.

  Study EGAS00001007175

• Targeted_NanoSeq___Thyroid

  Targeted NanoSeq in thyroid from a number of donors, both healthy and with pathology.

  Study EGAS00001007647

• Clonal IGHV rearrangements in IGH+ and IGHUND HGBCL-DH-BCL2(-BCL6)

  PCR-based VDJ profiling in IGH+ and IGHUND HGBCL-DH-BCL2(-BCL6) lymphomas

  Dataset EGAD50000001523

• WGS of 8 trios - affected child and both normal parents

  WGS of 8 trios - affected child and both normal parents

  Dataset EGAD00001001467

• RNA-Seq of human stimulated and cultured CD4+ Treg cells

  This dataset includes whole transcriptome data of human stimulated and cultured CD4+ Treg cells (39 samples).

  Dataset EGAD00001005964

• The Nordic Centre of Excellence Programme in Molecular Medicine Data Access Committee

  Dac EGAC00000000006

• Novel de novo pathogenic variant in the GNAI1 as a cause of severe disorders of intellectual development with autistic features

  Study EGAS00001005346

• A cycling, progenitor-like cell population at the root of atypical teratoid rhabdoid tumor subtype differentiation trajectories

  Study EGAS00001008123

• Novel de novo pathogenic variant in the GNAI1 as a cause of severe disorders of intellectual development with autistic features

  Study EGAS00001005355

• 500FG DNA methylation data

  This dataset contains the DNA methylation data of 260 samples from Dutch healthy individuals.

  Dataset EGAD00010002769

• Mexican_Biobank_Genotypes

  Samples from the Mexican Biobank

  Dataset EGAD00010002361

• EGAD00010000518

  Samples from the Greek island of Crete, MANOLIS cohort

  Dataset EGAD00010000518

• The UCSF Low Grade Glioma Genome Project #1

  Dataset EGAD00001000714

• Datasets 929/938

  Datasets Galaxy 929/938 describe the amplified single chromosome sequencing data.

  Dataset EGAD00001004457

• Cell Line Dataset

  Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells

  Dataset EGAD00001001349

• Capture Hi-C

  Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci.

  Dataset EGAD00001001243

• qDNAseq CLUC dataset

  qDNAseq shallow sequencing dataset of the cell line use case.

  Dataset EGAD00001002071