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• SNParray_MOCOG

  Tumor and matched normal DNA profiling by SNP array

  Dataset EGAD00010002359

• NSAID-LIV

  1000G Phase 3 Imputed cases and controls from NSAID-induced PUD study

  Dataset EGAD00010001422

• 1506_Methylation_M.vd.Berge

  DNA methylation in bronchial biopsies of asthmatics, asthma in remission and healthy subjects

  Dataset EGAD00010001731

• Thai Cases

  252 dengue fever patients and 159 dengue shock syndrome patients

  Dataset EGAD00010001487

• OCAC OncoArray data

  Germline genotype data on 56,479 ovarian cancer cases and controls

  Dataset EGAD00010001192

• EGAD00010000474

  blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 2 (CC2)

  Dataset EGAD00010000474

• EGAD00010000476

  blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 1 (CC1)

  Dataset EGAD00010000476

• EGAD00010000478

  blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 3 (CC3)

  Dataset EGAD00010000478

• PDAC CT WEX PDX1

  Whole Exome Sequencing on PDAC PDX1 parental sample and 12 clones.

  Dataset EGAD00001004580

• H3Africa TrypanoGEN+ Phenotype

  TrypanoGEN+ phenotype data containing 183 samples from DRC, Malawi and Uganda.

  Dataset EGAD00001011348

• WES FASTQ files from three vials derived from QHJI14s04 human iPSC stock

  Whole exome sequencing libraries were made from three vials derived from QHJI14s04 human iPSC secondary cell stock, where Nimblegen SeqCap EZ library kit v3.0 was used. The libraries were sequenced with Illumina HiSeq 2500. This dataset contains 3 paired fastq files.

  Dataset EGAD50000001369

• GCP Challenges in Hepatology

  raw RNAseq data from blood plasma of patients diagnosed with liver disease. Total RNA libraries were prepared using the SMARTer Stranded Total RNA-Seq-Kit v3 - Pico Input Mammalian (Takara Bio). Libraries were paired-end sequenced (2x100) o a NovaSeq 6000 instrument using NovaSeq S2 or S1 kit (Illumina).

  Dataset EGAD50000000775

• Variants Derived From Heart Centre Biobank CHD Probands (Canada)

  Short variants identified in 731 CHD probands enrolled through the Heart Centre Biobank Registry (Canada).

  Dataset EGAD50000000838

• 10x Genomics single-cell RNA sequencing of cerebrospinal fluid

  This dataset contains fastq files from single-cell RNA sequencing of cerebrospinal fluid of 81 patients with multiple sclerosis (n=33) or other neurological disease (n=48) using the 10x Genomics Chromium single cell 3’ v2 chemistry. Sequencing was performed using an Illumina HiSeq4000 sequencer.

  Dataset EGAD50000000184

• Trynka_sceQTL_genotypes

  Blood samples were obtained from 119 healthy individuals of British ancestry. Genomic DNA was isolated from a suspension of PBMCs from each individual using a DNA isolation kit (Qiagen). Genotyping was then performed using the Infinium CoreExome-24 (v1.3) chip (Illumina).

  Dataset EGAD00010002291

• A novel subset of human CD33+ haematopoietic stem cells characterized at single-cell resolution

  This dataset comprises single-cell RNA sequencing of the human Lin-CD34+38-45RA-90+49f+ phenotype isolated from 2 normal cord donors. Library preparation was performed following a modified CEL-Seq2 protocol.

  Dataset EGAD00001003955

• WGS from PDAC samples

  Bam files from WGS of PDAC samples used in the PCSI mismatch repair study

  Dataset EGAD00001006262

• The natural history of clonal haematopoiesis: colony WGS

  Whole-genome sequencing of 288 single-cell-derived blood colonies from 3 elderly individuals with clonal haematopoiesis.

  Dataset EGAD00001007684

• HiC-sequencing in human monocyte differentiation

  This dataset consists of in situ HiC-seq data from human monocytes, monocyte-derived dendritic cells as well as monocyte-derived cells that were subjected to siRNA treatment targeting CTCF or RAD21. In total, the data set includes 42 samples.

  Dataset EGAD00001007955

• Measurable residual disease in elderly acute myeloid leukemia: results from the PETHEMA-FLUGAZA phase III clinical trial

  In our study, we hypothetyzed that CD34progenitors from cases with undetectable Minimal residual Disease (MRD) by flow cytometry would contain cells with leukemic-initiating-potential that could be identified on genetic (rather than phenotypic) grounds by Whole Exome Sequencing.

  Dataset EGAD00001006585

• Transcriptome sequencing of replication repair deficient brain cancers

  Hypermutant tumors which harbor many somatic mutations may obscure the interpretation of targetable genomic events. This dataset contains transcriptome sequencing from 21 replication repair deficient brain tumor samples as well as healthy controls.

  Dataset EGAD00001006921

• University of Helsinki and Turku University Hospital Data Access Committee

  Dac EGAC00001001760

• Multi-omics integration reveals only minor long-term molecular and functional sequelae in immune cells of individuals recovered from COVID-19

  Dac EGAC00001002267

• Whole Exome Sequencing of Spanish Patients diagnosed with rare ophtalmogenetic disorders: Macular Dystrophy, Retinitis Pigmentosa and Leber's congenital amaurosis.

  Study EGAS00001004084

• yemcha-U-1

  Yemen and Chad Genotyping

  Dataset EGAD00010001868

• 5074STDY-G-1

  Genetic Overlap between Metabolic and Psychiatric disease

  Dataset EGAD00010001484

• EGAD00010000646

  DNA methylation analysis of 35 prostate tumor and 6 normal prostate samples

  Dataset EGAD00010000646

• EGAD00010000692

  Genome-wide DNA methylation epigenotyping of African rainforest hunter-gatherers and neighbouring agriculturalists by Illumina HumanMethylation450

  Dataset EGAD00010000692

• Blood dataset - Case

  blood-based gene expression from breast cancer cases

  Dataset EGAD00010001063

• EGAD00010000560

  SNP array of 7 HCCs and matched background liver in children with bile salt export pump deficiency

  Dataset EGAD00010000560

• Mutational landscape and clonal architecture in grade-II/III gliomas

  Dataset EGAD00001001213

• Expression profiles and genetic makeup of agnospheres.

  WES performed on 15 CUP-derived samples

  Dataset EGAD00001006668

• Smoking-dependent expression alterations in nasal epithelium reveal immune impairment linked to germline variation and lung cancer risk

  Study EGAS00001006137

• Genomic and immune signatures predict clinical outcome in newly diagnosed multiple myeloma treated with immunotherapy regimens

  Study EGAS00001007404

• Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)

  Dac EGAC00001001626

• Study of renal cancers and renal cancer metastases

  Study EGAS00001001176

• Adaptive single-KIR+NKG2C+ NK cells expanded from superdonors show potent missing-self reactivity and efficiently control HLA-mismatched acute myeloid leukemia

  Study EGAS00001006614

• Preoperative ipilimumab plus nivolumab in locoregionally advanced urothelial cancer (NABUCCO Cohorts 1 and 2)

  Study EGAS00001004521

• Integrative genomic analyses of European intrahepatic cholangiocarcinoma: new ROS1 fusion gene and PBX1 as prognostic marker

  Study EGAS00001007525

• mRNA profiling of human plucked hair follicle

  mRNA profiling of human plucked hair follicle from frontal and occipital scalp

  Dataset EGAD00010001501

• EGAD00010000690

  Genome-wide SNP genotyping of African rainforest hunter-gatherers and neighbouring agriculturalists by Illumina HumanOmniExpress

  Dataset EGAD00010000690

• RHD_NC_OMNI_Controls

  Healthy volunteers and missing phenotype individuals recruited in New Caledonia with higher density genotyping

  Dataset EGAD00010000962

• Transcriptome of (monocytes and dendritic cells ), from donor S13, replicate 1 control

  Dataset EGAD00001009030

• Transcriptome of (monocytes and dendritic cells ), from donor S12, replicate 2 patient

  Dataset EGAD00001009029

• Transcriptome of (monocytes and dendritic cells ), from donor S14, replicate 1 control

  Dataset EGAD00001009032

• Transcriptome of (monocytes and dendritic cells ), from donor S14, replicate 2 control

  Dataset EGAD00001009033

• Transcriptome of (monocytes and dendritic cells ), from donor S15, replicate 1 patient

  Dataset EGAD00001009034

• Transcriptome of (monocytes and dendritic cells ), from donor S15, replicate 2 patient

  Dataset EGAD00001009035

• Transcriptome of (monocytes and dendritic cells ), from donor S16, replicate 1 patient

  Dataset EGAD00001009036

• Transcriptome of (monocytes and dendritic cells ), from donor S16, replicate 2 patient

  Dataset EGAD00001009037