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• banfora_20150706_X

  Genotype data (in binary PLINK format) and imputed data (with merged 1000Gp3 and AGVP reference panel in GEMMA BIMBAM dosage format) for 355 individuals from the VAC050 trial performed in Banfora, Burkina Faso - X chromosome.

  Dataset EGAD00010002579

• banfora_20150706_autosomes

  Genotype data (in binary PLINK format) and imputed data (with merged 1000Gp3 and AGVP reference panel in GEMMA BIMBAM dosage format) for 355 individuals from the VAC050 trial performed in Banfora, Burkina Faso - autosomes.

  Dataset EGAD00010002581

• Batch1_Genotypes_Raw

  Genotypes generated for Puno cohort Batch 1. Case (PRE) and control (PUN) families were recruited in hospital, and additional unrelated controls were recruited in university (UNA). Raw genotypes no QC.

  Dataset EGAD00010002126

• H3K27ac HiChIP Dataset for 19 T-ALL patients and one normal control sample

  19 H3K27ac HICHIP from T-ALL patient samples and one healthy normal control sample. Reads were aligned to HG38 reference.

  Dataset EGAD50000000023

• Adaptive nanopore sequencing of chrX from peripheral samples

  Analysis of skewed X inactivation for X-linked disorders

  Dataset EGAD50000000638

• Patient TSO500 VCF files

  Tumours from MMRd EC patients treated with 2 cycles neoadjuvant ICI. TruSight Oncology 500 (TSO 500) panel for all 10 tumour samples from patients included in the trial.

  Dataset EGAD50000000694

• UniKilinikum Wuerzburg MSNZ AGRasche/AG Riedel EMD DAC

  This is a Data access committee for the Data presented in the paper tilted "Spatially resolved transcriptomics reveals profound subclonal heterogeneity and T cell dysfunction in extramedullary myeloma"

  Dac EGAC50000000173

• Profiling of human fecal microbiota for succinate consumption

  Enrichments of human stool samples in culture medium containing succinate as the main carbon source and the corresponding stool samples.

  Dataset EGAD50000000740

• Systematic dissection of tumor-normal single-cell ecosystems across a thousand tumors of 30 cancer types

  Raw bam file for bulk RNA-seq of checkpoint-blockade treated lung cancer cohorts

  Dataset EGAD50000000469

• RNA-seq of murine osteosarcoma cell line genetically modified for CYR61

  Transcriptomic analysis of K7M2 murine osteosarcoma cells stably modified to overexpress or repress CYR61

  Study EGAS50000000526

• Sequencing data for filanesib-treated hepatoblastoma samples

  This dataset contains RNA sequencing data of two hepatoblastoma PDX cell models. Cells were either treated with KSP inhibitor filanesib or with DMSO (controls).

  Dataset EGAD50000001314

• GCAT| SNParray coreSpain V3 TopMed

  4988 samples issued from GCAT cohort, genotyped with MEGAex-Infinium Array, with data for Cr1-23. Plink files with QC and imputed using TOPMed r2.

  Dataset EGAD00010002749

• RNA sequencing of mCRPC patient biopsies

  RNA sequencing of mCRPC patient biopsies obtained for the profiling of the prevalence of immune transcripts. Manuscript can be found at PMID: 35491356

  Dataset EGAD50000001811

• GCAT| SNParray GSA TopMed

  2746 samples issued from GCAT cohort, genotyped with GSA Array, with data for Cr1-23. Plink files with QC and imputed using TOPMed.

  Dataset EGAD00010002758

• Transcriptome analysis of Hepatitis B for drug discovery and clinical applications

  We analyzed blood transcriptome of HBV positive untreated patients (men) using the CAGE technology.

  Study JGAS000053

• ERDERA WES reanalysis - DPF1 Batch 1

  Processed data for 100 WES from the Data Processing Freeze 1

  Dataset EGAD50000002187

• Optimized large-scale longitudinal biorepository of gastroesophageal adenocarcinoma patient-derived organoids: High-fidelity models for personalized treatment to overcome resistance

  Whole exome sequencing of patient tumour samples and matched patient derived organoids.

  Dataset EGAD50000002315

• SEARCH FOR BACTERIA IN NEURAL TISSUE FROM AMYOTROPHIC LATERAL SCLEROSIS

  The study aims to find bacteria in neural tissue from patients with amyotrophic lateral sclerosis

  Study EGAS00001003295

• 10x Single Cell Gene Expression Library TENX069

  10x Single Cell Gene Expression library TENX069 for Triple negative breast cancer patient-derived xenograft SA609X4XB03083

  Dataset EGAD00001011211

• G3BP2-KIT drives leukemia amenable to kinase inhibition in Ph-like ALL

  G3BP2-KIT drives leukemia amenable to kinase inhibition in Ph-like ALL: RNAseq for human sample

  Dataset EGAD00001007564

• single-cell ATAC-seq

  Single-cell ATAC-seq data for 5 CLL samples (2 controls, 3 tumor) of the CancerEpiSys-PRECiSe project.

  Dataset EGAD00001005965

• Primary Neuroblastoma Circle-seq Data

  Circle-seq data for 21 primary neuroblastoma samples supporting Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020).

  Dataset EGAD00001006580

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0189_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0189_001 for Triple negative breast cancer patient-derived xenograft SA535X7XB03448

  Dataset EGAD00001011226

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0195_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0195_001 for Triple negative breast cancer patient-derived xenograft SA535X8XB03664

  Dataset EGAD00001011234

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0148_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0148_001 for Triple negative breast cancer patient-derived xenograft SA535X4XB02498

  Dataset EGAD00001011221

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0173_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0173_002 for Triple negative breast cancer patient-derived xenograft SA535X9XB03617

  Dataset EGAD00001011232

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0173_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0173_001 for Triple negative breast cancer patient-derived xenograft SA535X9XB03616

  Dataset EGAD00001011233

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0208_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0208_002 for Triple negative breast cancer patient-derived xenograft SA535X9XB03776

  Dataset EGAD00001011237

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0151_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0151_001 for Triple negative breast cancer patient-derived xenograft SA1035X8XB03425

  Dataset EGAD00001011247

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0019_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0019_001 for Triple negative breast cancer patient-derived xenograft SA604X7XB02089

  Dataset EGAD00001011253

• 10x Single Cell Gene Expression Library TENX063

  10x Single Cell Gene Expression library TENX063 for Triple negative breast cancer patient-derived xenograft SA609X3XB01584

  Dataset EGAD00001011268

• Single-cell RNA sequencing for metastatic gastric adenocarcinoma

  Single-cell RNA sequencing was performed on a total of 20 PC specimens.

  Dataset EGAD00001006172

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0152_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0152_001 for Triple negative breast cancer patient-derived xenograft SA609X6XB03401

  Dataset EGAD00001011215

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0184_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0184_002 for Triple negative breast cancer patient-derived xenograft SA535X8XB03434

  Dataset EGAD00001011231

• Beta values of methylation data of the CUP/reference/validation cohort (H021)

  Beta values of methylation data of the CUP/reference/validation cohort (H021) used for the validation cohort described in the publication

  Dataset EGAD00001008669

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0145_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0145_002 for Triple negative breast cancer patient-derived xenograft SA1035X7XB03340

  Dataset EGAD00001011245

• Whole genome sequencing of 78 follicular lymphoma tumours and matched normals

  Whole genome sequencing for tumour/normal matched pairs from 78 samples

  Dataset EGAD00001011343

• Engineered cartilage: deriving design principles from human developmental pathways (2025-10-02)

  Engineered cartilage: deriving design principles from human developmental pathways . This dataset contains all the data available for this study on 2025-10-02.

  Dataset EGAD00001015724

• Exome sequencing of osteosarcoma, blood and saliva

  We profiled 31 osteosarcoma tumor patient samples, 18 blood and 1 saliva control samples by exome sequencing, for a total of 50 samples. The raw fastqs are provided.

  Dataset EGAD00001011370

• ATAC-seq

  This dataset contains the raw sequencing data (Runs) for all 10x Genomics single-cell ATAC-seq Experiment.

  Dataset EGAD00001009822

• 10x Single Cell Gene Expression Library TENX068

  10x Single Cell Gene Expression library TENX068 for Triple negative breast cancer patient-derived xenograft SA609X4XB03080

  Dataset EGAD00001011210

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0146_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0146_002 for Triple negative breast cancer patient-derived xenograft SA609X5XB03223

  Dataset EGAD00001011214

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0182_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0182_001 for Triple negative breast cancer patient-derived xenograft SA535X7XB03304

  Dataset EGAD00001011225

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0189_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0189_002 for Triple negative breast cancer patient-derived xenograft SA535X8XB03663

  Dataset EGAD00001011229

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0145_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0145_001 for Triple negative breast cancer patient-derived xenograft SA1035X7XB03338

  Dataset EGAD00001011244

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0175_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0175_002 for Triple negative breast cancer patient-derived xenograft SA1035X8XB03631

  Dataset EGAD00001011249

• Dataset for LCPlus_WGS

  WES/WGS sequencing data of 56 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired

  Dataset EGAD00001009275

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0020_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0020_002 for Triple negative breast cancer patient-derived xenograft SA604X8XB02164

  Dataset EGAD00001011254

• Raw sequencing data for PicoCNV and MutLX2 development papers

  Bulk tumour, germline and DigiPico WGS BAM files from patients 11611, 11615, 11619

  Dataset EGAD00001010302

• Whole exome sequencing of serially sampled TNBC patients on pre/on PARP inhibitor

  Novaseq whole exome raw sequence files (FastQ) for breast cancer tumor core biopsies and blood normal control.

  Dataset EGAD00001007916