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• Multiregion exome sequencing

  Multiregional analysis of three cases of GBM. For each tumor, 9 portions were analyzed by whole exome sequencing. A total of 27 bam files are present in our dataset.

  Dataset EGAD00001007063

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0198_004A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0198_004A for Lymph node patient sample RLN_02_5Prime

  Dataset EGAD00001010237

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0198_005A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0198_005A for Lymph node patient sample RLN_03_5Prime

  Dataset EGAD00001010238

• DLP+ Single Cell Genomic Library 98211

  DLP+ Single Cell Genomic Library 98211 for Diffuse large B-cell lymphoma patient sample TFRIPAIR11_DLBCL

  Dataset EGAD00001010239

• DLP+ Single Cell Genomic Library A98180

  DLP+ Single Cell Genomic Library A98180 for Diffuse large B-cell lymphoma patient sample TFRI_Pair_13_DLBCL

  Dataset EGAD00001010240

• DLP+ Single Cell Genomic Library A98193

  DLP+ Single Cell Genomic Library A98193 for Follicular lymphoma patient sample TFRI_Pair_6_FL

  Dataset EGAD00001010241

• DLP+ Single Cell Genomic Library A98203

  DLP+ Single Cell Genomic Library A98203 for Diffuse large B-cell lymphoma patient sample TFRIPAIR8_DLBCL

  Dataset EGAD00001010242

• DLP+ Single Cell Genomic Library A98205

  DLP+ Single Cell Genomic Library A98205 for Follicular lymphoma patient sample TFRIPAIR9_FL

  Dataset EGAD00001010243

• DLP+ Single Cell Genomic Library A98208

  DLP+ Single Cell Genomic Library A98208 for Diffuse large B-cell lymphoma patient sample TFRIPAIR10_DLBCL

  Dataset EGAD00001010244

• DLP+ Single Cell Genomic Library A98221A

  DLP+ Single Cell Genomic Library A98221A for Follicular lymphoma patient sample TFRIPAIR5_FL

  Dataset EGAD00001010245

• DLP+ Single Cell Genomic Library A98225

  DLP+ Single Cell Genomic Library A98225 for Diffuse large B-cell lymphoma patient sample TFRIPAIR12_DLBCL_rel

  Dataset EGAD00001010246

• DLP+ Single Cell Genomic Library A98288

  DLP+ Single Cell Genomic Library A98288 for Follicular lymphoma patient sample TFRIPAIR2_FL

  Dataset EGAD00001010247

• DLP+ Single Cell Genomic Library A98297

  DLP+ Single Cell Genomic Library A98297 for Follicular lymphoma patient sample TFRIPAIR3_FL

  Dataset EGAD00001010248

• DLP+ Single Cell Genomic Library A98167

  DLP+ Single Cell Genomic Library A98167 for Diffuse large B-cell lymphoma patient sample TFRIPAIR4_DLBCL

  Dataset EGAD00001010249

• Single-cell ATAC-Seq (Chromium Next GEM Single Cell ATAC kit v1.1 from 10X Genomics )

  Human data for chromatin accessibility (scATAC-Seq) in CD34+ B cell precursors.

  Dataset EGAD00001010910

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0142_004

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0142_004 for Triple negative breast cancer sample SA1035X6XB03209

  Dataset EGAD00001011243

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0162_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0162_002 for Triple negative breast cancer sample SA1035X7XB03502

  Dataset EGAD00001011246

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0162_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0162_001 for Triple negative breast cancer sample SA1035X8XB03420

  Dataset EGAD00001011248

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0164_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0164_002 for Triple negative breast cancer sample SA530X3XB03295

  Dataset EGAD00001011250

• BLUEPRINT September 2016, ChIPmentation Burkitt Lymphoma from lymph node, on Genome GRCh38

  ChIPmentation data for 3 sample(s) Burkitt Lymphoma from lymph node, on Genome GRCh38. 10 run(s), 8 experiment(s), 8 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002939

• BLUEPRINT September 2016, ChIPmentation Lymphoma_Follicular from lymph node, on Genome GRCh38

  ChIPmentation data for 3 sample(s) Lymphoma_Follicular from lymph node, on Genome GRCh38. 7 run(s), 6 experiment(s), 6 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002931

• BLUEPRINT September 2016, ChIPmentation Acute Lymphocytic Leukemia from bone marrow, on Genome GRCh38

  ChIPmentation data for 1 sample(s) Acute Lymphocytic Leukemia from bone marrow, on Genome GRCh38. 2 run(s), 2 experiment(s), 2 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002930

• ICGC PCAWG Dataset: GACA-CN_PCAWG_WGS_BWA

  ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: GACA-CN.

  Dataset EGAD00001003132

• SA501X3F direct library preparation (DLP) single-cell genomes

  Microfluidic direct library preparation (DLP) single-cell whole-genome BAM files for third-passage patient-derived primary triple-negative breast cancer xenograft SA501X3F.

  Dataset EGAD00001003149

• SA501X4F direct library preparation (DLP) single-cell genomes

  Microfluidic direct library preparation (DLP) single-cell whole-genome BAM files for fourth-passage patient-derived primary triple-negative breast cancer xenograft SA501X4F.

  Dataset EGAD00001003150

• 184-hTERT-L2 direct library preparation (DLP) single-cell genomes

  Microfluidic direct library preparation (DLP) single-cell whole-genome BAM files for near-diploid immortalized breast epithelial cell line 184-hTERT-L2.

  Dataset EGAD00001003152

• Pulldown DNA methylation study v2

  Pilot study to set up sequencing protocols for targeted pulldown methylation profiling

  Dataset EGAD00001001242

• OCCAMS_Oesophageal Cancer Organoids_1

  ***THIS DATA CAN ONLY BE USED FOR NON-COMMERCIAL CANCER RESEARCH*** Sequencing of organoid cell lines derived from oesophageal tumour sections taken from patients diagnosed with primary oesophageal cancer who underwent tumour resection surgery.

  Dataset EGAD00001001889

• Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - ds_190916_2

  ICGC Oesophageal Adenocarcinoma tissue samples

  Dataset EGAD00001002689

• bulkRNA

  Bulk RNA-seq for cALL patient-derived PDX samples

  Dataset EGAD00001006133

• scRNA PDX

  Single cell RNA-seq for PT1-derived PDX samples

  Dataset EGAD00001006134

• Next-generation sequencing data derived from patient single cells or clonal colonies

  The following samples were generated from the patient samples used in the study: - Bulk DNA sequencing specifically targeting mutated sites of interest derived from clonal cell populations (288 monoclonal colonies - 2 replicates). - Targeted Muta-seq method (Patient P342: 2208 cells, Patient HRK: 1066 cells, Patient LAK: 618 cells, Patient P101: 1080 cells) - Smart-seq2 method (Patient P342 - 768 individual cells).

  Dataset EGAD00001006228

• Metastatic_Breast_Cancer_Validation

  Validation of point mutations and small insertions and deletions in primary and associated metastatic breast cancer samples with matched normal tissues.

  Study EGAS00001001968

• WES-based association study of cefaclor-induced anaphylaxis

  This study investigates the genetic factors associated with cefaclor-induced anaphylaxis using whole-exome sequencing (WES).

  Study EGAS50000001163

• LUMC Department Biomedical Data Sciences, Osteoarthritis group

  Committee to control single nucleus multiomics data generated within the project Single Cell Microgel embedded iPS-cells to map molecular variability of cell differentiation using a systems biology approach (SCI-MAP) at the LUMC.

  Dac EGAC50000000644

• MSI_Cancer_Models___WGS

  The study will use whole genome sequencing to aid in define determinants of WRN dependency in MSI Cancer models.

  Study EGAS00001004178

• Delineating pediatric brain tumor progression using single-nuclei sequencing

  raw fastq files from the single-nuclei RNA-seq experiments generated from 42 paediatric CNS tumour samples by the 10X Genomics technology.

  Dataset EGAD50000001831

• Initial WGS of plasma cell neoplasms in fire fighters exposed to the WTC attack

  Initial WGS of plasma cell neoplasms in fire fighters exposed to the WTC attack

  Dataset EGAD00001006896

• Myeloproliferative_Neoplasms__MPN__Exome_Validation_Study

  Experiments using targeted pulldown methods will be sequenced to validate findings in the exomes of patients with Myeloproliferative Neoplasms (MPN).

  Study EGAS00001000404

• RNAseq data set used in the study, 10 samples

  RNAseq data set used in the study, 10 samples

  Dataset EGAD00001007967

• Assessing mitochondrial bioenergetics in coronary artery disease: A translational left ventricular tissue study in humans (The AMBITION study).

  Single nuclei transcriptomic data from the AMBITION study.

  Dataset EGAD00001011078

• Functional dissection of inherited non-coding variation influencing multiple myeloma risk

  The project aimed at identification of genotype dependent chromatin accessibility in MM patients.

  Study EGAS00001005394

• CNV profile in HSP90 inhibitor resistant K562 cells

  Analysis of the acquired copy number profile in K562 cell which got resistant against HSP90 inhibitors.

  Study EGAS00001006385

• Longitudinal ctDNA in Uveal Melanoma

  Assess the efficacy of using multi-modal ctDNA analysis to detect relapse in patients with uveal melanoma

  Study EGAS00001006373

• Transcriptional profiling and clonality analysis of peripheral blood B cells and small intestinal plasma cells in celiac disease

  Single-cell RNA-seq and BCR sequencing and/or inference of sorted IgA+ peripheral blood B-lineage cells and small intestinal plasma cells of untreated celiac disease patients.

  Study EGAS50000000229

• A73044B

  Whole genome sequencing for single cells for library A73044B 2085 cells; filetype=bam

  Dataset EGAD00001007101

• A73047D

  Whole genome sequencing for single cells for library A73047D 2091 cells; filetype=bam

  Dataset EGAD00001007102

• A95633B

  Whole genome sequencing for single cells for library A95633B 2259 cells; filetype=bam

  Dataset EGAD00001007104

• A96115A

  Whole genome sequencing for single cells for library A96115A 1635 cells; filetype=bam

  Dataset EGAD00001007111

• A96193B

  Whole genome sequencing for single cells for library A96193B 2410 cells; filetype=bam

  Dataset EGAD00001007118

• A96240B

  Whole genome sequencing for single cells for library A96240B 1683 cells; filetype=bam

  Dataset EGAD00001007122

• A108851B

  Whole genome sequencing for single cells for library A108851B 1681 cells; filetype=bam

  Dataset EGAD00001007596

• A108870A

  Whole genome sequencing for single cells for library A108870A 1795 cells; filetype=bam

  Dataset EGAD00001007598

• A95623A

  Whole genome sequencing for single cells for library A95623A 1897 cells; filetype=bam

  Dataset EGAD00001007607

• A95668B

  Whole genome sequencing for single cells for library A95668B 1905 cells; filetype=bam

  Dataset EGAD00001007609

• A95720A

  Whole genome sequencing for single cells for library A95720A 1467 cells; filetype=bam

  Dataset EGAD00001007613

• A96190A

  Whole genome sequencing for single cells for library A96190A 1833 cells; filetype=bam

  Dataset EGAD00001007620

• A96233B

  Whole genome sequencing for single cells for library A96233B 1601 cells; filetype=bam

  Dataset EGAD00001007623

• A98234B

  Whole genome sequencing for single cells for library A98234B 1600 cells; filetype=bam

  Dataset EGAD00001007627

• A98304A

  Whole genome sequencing for single cells for library A98304A 1560 cells; filetype=bam

  Dataset EGAD00001007636

• A95724A

  Whole genome sequencing for single cells for library A95724A 503 samples; filetype=bam

  Dataset EGAD00001008229

• A95724B

  Whole genome sequencing for single cells for library A95724B 581 samples; filetype=bam

  Dataset EGAD00001008230

• A96146A

  Whole genome sequencing for single cells for library A96146A 1195 samples; filetype=bam

  Dataset EGAD00001008233

• A96149B

  Whole genome sequencing for single cells for library A96149B 1792 samples; filetype=bam

  Dataset EGAD00001008235

• A96162B

  Whole genome sequencing for single cells for library A96162B 1316 samples; filetype=bam

  Dataset EGAD00001008238

• A96172A

  Whole genome sequencing for single cells for library A96172A 1476 samples; filetype=bam

  Dataset EGAD00001008240

• A96172B

  Whole genome sequencing for single cells for library A96172B 1694 samples; filetype=bam

  Dataset EGAD00001008241

• A96175C

  Whole genome sequencing for single cells for library A96175C 1473 samples; filetype=bam

  Dataset EGAD00001008243

• A96179B

  Whole genome sequencing for single cells for library A96179B 1396 samples; filetype=bam

  Dataset EGAD00001008245

• A96180B

  Whole genome sequencing for single cells for library A96180B 1189 samples; filetype=bam

  Dataset EGAD00001008246

• A96183C

  Whole genome sequencing for single cells for library A96183C 1036 samples; filetype=bam

  Dataset EGAD00001008247

• A96184A

  Whole genome sequencing for single cells for library A96184A 1733 samples; filetype=bam

  Dataset EGAD00001008248

• A96186A

  Whole genome sequencing for single cells for library A96186A 850 samples; filetype=bam

  Dataset EGAD00001008249

• A96186C

  Whole genome sequencing for single cells for library A96186C 525 samples; filetype=bam

  Dataset EGAD00001008250

• A96199B

  Whole genome sequencing for single cells for library A96199B 1170 samples; filetype=bam

  Dataset EGAD00001008251

• A96201A

  Whole genome sequencing for single cells for library A96201A 536 samples; filetype=bam

  Dataset EGAD00001008252

• A96205A

  Whole genome sequencing for single cells for library A96205A 1907 samples; filetype=bam

  Dataset EGAD00001008253

• A96210C

  Whole genome sequencing for single cells for library A96210C 1191 samples; filetype=bam

  Dataset EGAD00001008254

• A96211C

  Whole genome sequencing for single cells for library A96211C 1397 samples; filetype=bam

  Dataset EGAD00001008255

• A96215A

  Whole genome sequencing for single cells for library A96215A 1312 samples; filetype=bam

  Dataset EGAD00001008256

• A96216A

  Whole genome sequencing for single cells for library A96216A 1001 samples; filetype=bam

  Dataset EGAD00001008257

• A96220B

  Whole genome sequencing for single cells for library A96220B 1267 samples; filetype=bam

  Dataset EGAD00001008258

• A96244A

  Whole genome sequencing for single cells for library A96244A 1374 samples; filetype=bam

  Dataset EGAD00001008259

• A98176A

  Whole genome sequencing for single cells for library A98176A 1003 samples; filetype=bam

  Dataset EGAD00001008260

• A98176B

  Whole genome sequencing for single cells for library A98176B 1389 samples; filetype=bam

  Dataset EGAD00001008261

• A98284A

  Whole genome sequencing for single cells for library A98284A 1265 samples; filetype=bam

  Dataset EGAD00001008262

• A98284B

  Whole genome sequencing for single cells for library A98284B 1582 samples; filetype=bam

  Dataset EGAD00001008263

• A98289B

  Whole genome sequencing for single cells for library A98289B 1032 samples; filetype=bam

  Dataset EGAD00001008264

• A98293B

  Whole genome sequencing for single cells for library A98293B 703 samples; filetype=bam

  Dataset EGAD00001008265

• Single Cell Genome Sequence for DLP+ library A118368B

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA605 passage 3 on DLP+ library A118368B

  Dataset EGAD00001009432

• Single Cell Genome Sequence for DLP+ library A118425B

  Single Cell Genome Sequence for Immortalized breast epithelium BRCA2+/- Tp53-/- cell line 184-hTert L9 116.66 cell line SA1188 on DLP+ library A118425B

  Dataset EGAD00001009434

• Single Cell Genome Sequence for DLP+ library A118784A

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1050B passage 1, patient-derived xenograft SA1050E passage 1 on DLP+ library A118784A

  Dataset EGAD00001009436

• Single Cell Genome Sequence for DLP+ library A118790A

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA610 passage 3, patient-derived xenograft SA1096C passage 1 on DLP+ library A118790A

  Dataset EGAD00001009437

• Single Cell Genome Sequence for DLP+ library A118797B

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1184D passage 1 on DLP+ library A118797B

  Dataset EGAD00001009438

• Single Cell Genome Sequence for DLP+ library A118804A

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1162B passage 1, patient-derived xenograft SA1096B passage 1 on DLP+ library A118804A

  Dataset EGAD00001009439

• Single Cell Genome Sequence for DLP+ library A118808B

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1096C passage 1 on DLP+ library A118808B

  Dataset EGAD00001009441

• Single Cell Genome Sequence for DLP+ library A118814B

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1162B passage 1 on DLP+ library A118814B

  Dataset EGAD00001009443

• Single Cell Genome Sequence for DLP+ library A96171A

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA501 passage 2, patient-derived xenograft SA611 passage 3 on DLP+ library A96171A

  Dataset EGAD00001009458

• Tumour sample for patient SA667

  Whole genome sequencing of tumour sample for triple negative breast cancer patient SA667

  Dataset EGAD00001009210

• Tumour sample for patient SA668

  Whole genome sequencing of tumour sample for triple negative breast cancer patient SA668

  Dataset EGAD00001009211