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• Breast Invasive Lobular Carcinoma CDH1 WGS dataset

  We subjected to whole genome sequencing (WGS) one ILC case lacking CDH1 biallelic mutations. Both tumor and normal samples were sequenced.

  Dataset EGAD50000000696

• Normalised mRNA expressions

  Quantile-normalised and batch corrected

  Dataset EGAD00010001561

• APCDR AGV Baganda

  APCDR AGV Project: Array data from 100 Baganda. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001055

• WES dataset of mesothelioma CONFIRM study

  This dataset comprises 33 whole-exome sequencing (WES) samples from mesothelioma patients, including 18 tumor, 13 matched normal, and 2 relapsed samples.

  Dataset EGAD50000002621

• Chad genetic diversity reveals an African history marked by multiple Holocene Eurasian migrations

  Whole-genome sequencing data from Chad and Lebanon.

  Dataset EGAD00001002742

• aGCT_WGS

  Contains 46 aGCT tumor sample WGS BAMs from 33 patients and corresponding 33 germline reference WGS BAMs from those 33 patients

  Dataset EGAD00001005999

• Gene expression from human iPSC derived cortical neurons

  RNASeq gene expression profiles from 3 icas9 human iPSC derived cortical neurons treated with and without doxycycline.

  Dataset EGAD00001006559

• PitNET normal-tumor exome sequencing samples

  PitNET white blood cell DNA - tumor DNA exome sequencing samples with Illumina exome sequencing. Fifteen patients and total of 30 exomes.

  Dataset EGAD00001006390

• HNSCC Whole Exome Sequencing

  Whole exome sequencing data of 28 matched normal-tumor-relapse patients from Lübeck and Munich (Germany).

  Dataset EGAD00001006919

• HGSOC-celllines-SmartSeq3

  Smart-seq3 scRNA-seq of cells from primary (OV2295) and metastatic (OV2295R2) high-grade serous ovarian cancer cell-line

  Dataset EGAD00001009798

• WGS from 68 MM patients

  Mutations calls from 68 MM patients collected with Mutect2. All tumor samples were CD138+ cells at diagnosis and all control samples were PBMCs.

  Dataset EGAD00001009692

• Colorectal Microenvironment Spatial Mapping Dataset

  Two samples derived from a colorectal cancer female patient - tumor tissue and normal adjacent tissue analyzed via Visium Spatial Gene Expression.

  Dataset EGAD00001015675

• Genomic heterogeneity recapitulated in a PDXovo model - WXS mapped reads

  Ultra-Fast Patient-Derived Xenografts Identify Functional and Spatial Tumour Heterogeneities that Drive Therapeutic Resistance - WXS mapped reads

  Dataset EGAD00001003589

• Genomic heterogeneity recapitulated in a PDXovo model - WXS unaligned reads

  Ultra-Fast Patient-Derived Xenografts Identify Functional and Spatial Tumour Heterogeneities that Drive Therapeutic Resistance - WXS unaligned reads

  Dataset EGAD00001003590

• Whole-exome sequencing data of Hepato-Cholangiocarcinoma

  Hepatocellular carcinoma specimens, intrahepatic cholangiocarcinoma specimens and liver normal tissues collected from 7 samples, including 44 fastq files from whole exome sequencing.

  Dataset EGAD00001003892

• Integrated Genomic, Epigenetic, and Expression Analyses of Ovarian Cancer Cell Lines

  In this dataset there are 55 whole genome sequencing samples of epithelial ovarian carcinoma (bam files).

  Dataset EGAD00001004532

• DNMT3A microcephalic primordial dwarfism RRBS data

  RRBS sequence data from one control and one patient with de novo DNMT3A mutations resulting in microcephalic primordial dwarfism.

  Dataset EGAD00001004472

• Whole-exome and transcriptome in RMS

  Whole-exome sequencing in 16 RMS casesWhole-transcriptome sequencing in 8 RMS cases

  Dataset EGAD00001001105

• Application of Hi-C sequencing to detect structural variants in B-cell acute lymphoblastic leukemia

  Large structural variants are easily detected by Hi-C sequencing as strong, distant signals on a Hi-C contact map. Translocations are frequently evident in B-ALL and accurate identification of these translocations can guide clinical treatment options. Here were apply shallow Hi-C sequencing as an unbiased, cost-effective approach to identify translocations among B-ALL patients.

  Study EGAS00001005605

• FWO-project G.0687.12_X10-WGS

  Profiling subclonal architecture and phylogeny in tumors by whole-genome sequence data mining and single-cell genome sequencing

  Dataset EGAD00001001429

• Colorectal organoids and tumour tissue

  Whole genome sequencing of single cell derived organoids from normal colon tissue and colorectal cancer.

  Dataset EGAD00001001447

• Comprehansive analysis of somatic mutations and genetic variations with whole genome sequencing

  Indetification of stractural variations by using of long read whole genome sequencing data

  Study JGAS000516

• WM-WES dataset

  We performed whole-exome sequencing on Bone-Marrow and Peripheral Blood samples from WM patients, including 9 patients with sequential samples.

  Dataset EGAD50000001776

• Comparison of good PDX responders and bad PDX responders

  RNA-Seq raw data of untreated breast cancer xenografts known as good or bad acetalax responders.

  Dataset EGAD50000000876

• APCDR AGV Mandinka

  APCDR AGV Project: Array data from 88 Mandinka. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001057

• APCDR AGV Kalenjin

  APCDR AGV Project: Array data from 100 Kalenjin. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001052

• APCDR AGV Wolof

  APCDR AGV Project: Array data from 78 Wolof. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001050

• APCDR AGV Kikuyu

  APCDR AGV Project: Array data from 99 Kikuyu. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001049

• APCDR AGV Jola

  APCDR AGV Project: Array data from 79 Jola. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001048

• APCDR AGV Barundi

  APCDR AGV Project: Array data from 97 Barundi. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001051

• APCDR AGV Sotho

  APCDR AGV Project: Array data from 86 Sotho. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001046

• APCDR AGV Igbo

  APCDR AGV Project: Array data from 99 Igbo. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001045

• RNA-Seq of SMARCB1 re-expression and HDAC+mTOR inhibition experiments in malignant rhabdoid tumor organoids

  Dataset EGAD00001006574

• Whole-genome and transcriptome sequencing of a patient with extrapancreatic acinar cell carcinoma

  Dataset EGAD00001006023

• Whole-genome and transcriptome sequencing data of an undifferentiated gastric spindle cell sarcoma

  Dataset EGAD00001006014

• RNA-seq, WGS and WES of Hepatocellular carcinomas, enriched in fibrolamellar carcinomas

  Dataset EGAD00001005308

• Exome sequencing reads

  Exome sequencing reads of two UFM individuals and their family members (totally 11 individuals) belonging to two different Fragile X families. Alignment files in BAM format are provided.

  Dataset EGAD00001002276

• BAM files corresponding to PARN mutations identified in Hoyeraal-Hreidarsson syndrome patients

  PARN sequences of Patients 1 and 2 carrying mutatoins as decribed in Benyelles et al., EMBO Molecular Medicine 2019)

  Dataset EGAD00001005125

• Accelerated clonal evolution in refractory versus relapsed chronic lymphocytic leukemia upon treatment

  Identify and track clonal evolution of clones in consecutive human chronic lymphocytic leukemia samples identified by whole exome sequencing.

  Dataset EGAD00001005058

• HGS-3 - nanopore

  WGS Nanopore nanopore sequencing of organoid line HGS-3.1 and matching blood reference HGS-3

  Dataset EGAD00001005476

• Multiregional non-invasive genetic characterization of MM

  Genomic characterization (through whole-exome sequencing) of circulating tumor cells, bone marrow clonal plasma cells and extramedullary plasmacytomas from multiple myeloma patients.

  Dataset EGAD00001006028

• Pharmacogenomics of T-ALL

  Whole exome seq (N=21) and RNA-seq (N=36) data of additional T-ALL

  Dataset EGAD00001006434

• MDS MSC

  bam files, mapped to hg19 after dedup, recal, recalibration and clipping of overlapping redas

  Dataset EGAD00001006968

• Metagenome Sequencing Data Cachexia Non-Cachexia

  120 samples of cachectic and non cachectic. 240 Fastq files from Illumina metagenomic shothun paired End Sequencing

  Dataset EGAD00001010279

• HCA Organoids | Colon - Cancer, Multiome Sequencing Data

  Multiome sequencing of patient tissue and patient derived organoids in colon cancer

  Dataset EGAD00001015504

• Exome sequencing of FFPE sample

  Bam file from exome sequencing of FFPE sample from Ly3 using SeqCap EZ Human Exome Library (Roche Nimblegen, Inc., WI, USA) and Illumina HiSeq2000 sequencer.

  Dataset EGAD00001004782

• Sequencing .bam files

  Sequencing of untreated pancreatic cancer metastases and primary tumor sections.

  Dataset EGAD00001003153

• HiSeqXTen sequencing of tumour-normal sample pairs from three mesothelioma patients

  Aligned, merged and deduplicated BAM files from HiSeqXTen sequencing of six samples: matched tumour-normal pairs from three melanoma patients.

  Dataset EGAD00001003222

• GENOMIC INSTABILITY IN MISMATCH REPAIR DEFICIENT COLORECTAL CANCER WES MSI Colorectal Cancer

  This dataset contains Whole Exome Sequencing of 47 MSI colorectal cancers (CRCs) and paired adjacent normal mucosa

  Dataset EGAD00001004550

• Kidney Cancer Heterogeneity and Evolution Revealed by Multi-Region Exome Sequencing

  Paired end Illumina sequencing of whole exomes of multiple tumour regions.

  Dataset EGAD00001000734

• ICGC Korean Breast Cancer Project

  A comprehensive characterisation and analysis of human breast cancers through whole-genome sequencing.

  Dataset EGAD00001001322

• Targeted sequencing data on sequential liquid biopsy samples from CSPC patients

  Sequencing data from newly diagnosed high emtastatic burder prostate cancer patients receiving an AR pathway inhibitor (ARPI) or docetaxel. Targeted sequencing data of prostate cancer relevant genes using the PCF-SELECT capture panel. cfDNA from PreADT, baseline, on-treatment (Cycle1 to 6) taken on ARPI or Docetaxel were sequenced as well as patient-matched WBC DNA

  Dataset EGAD50000001960

• Hospitalised COVID-19 patients: transcriptomic data (longitudinal design- 3 timepoints)

  Hospitalised COVID-19 patients (n=81), cohort from Latvia, 224 transcriptome samples. Longitudinal sampling: A- acute phase, B- 1-month post-hospitalisation, C- 3-4 months post-hospitalization All patients(n=81) were unvaccinated during the study period, Male (n=35), Female (n=46), average age ~57

  Dataset EGAD50000002067

• 20191008_EGA_MELA_Acral_WGS+RNASeq

  Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 87 cases of melanoma Acral subtype. 63 cases also have RNASeq sequencing from the tumour sample.

  Dataset EGAD00001005500

• Tampere University Celiac Disease Research Data Access Committee

  This DAC will be used to reposit RNAseq data from intestinal biopsies of celiac disease patients on gluten-free diet and post-gluten challenge treated with placebo or TG2 inhibitor

  Dac EGAC50000000233

• Single cell RNA sequencing of samples from core and periphery of human glioblastoma

  Samples taken from various regions of three human glioblastomas were subject to single cell RNA sequencing.

  Dataset EGAD50000002080

• SIA Subtyping RNA Sequencing

  Associated with Molecular classification of small intestinal adenocarcinomas. RNA sequencing generated 849 .fastq files from 137 primary and recurrent small intestine adenocarcinoma samples from 135 patients.

  Dataset EGAD50000001762

• Long-read dataset

  Long-read transcriptomic data of control and FECD exp positive CECs

  Dataset EGAD50000000435

• Lifelines NEXT 16S v3-v4 amplicon sequencing

  16S v3-v4 amplicon sequencing of milk, fecal and oral cavity samples, along with sequencing controls, of a subset of newborn infants from Lifelines NEXT cohort

  Dataset EGAD50000000180

• CNV dataset

  Rare CNVs from schizophrenia cases and controls

  Dataset EGAD00010001074

• Bulk exome sequencing of primary GBM - SF 10360

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10360

  Dataset EGAD00001002274

• TFL unique case study

  Whole exome sequencing of a normal sample, primary tumor sample, and relapse tumor sample of a transformed non-Hodgkins follicular lymphoma patient with extraordinary response to treatment.

  Dataset EGAD00001002707

• Polyomavirus-positive Merkel cell carcinoma derived from a trichoblastoma suggests an epithelial origin of Merkel cell carcinoma

  Tricholastoma (TB): Exome Merkel cell carcinoma (MCC): Genome and Exome Healthy tissue (HT): Exome

  Dataset EGAD00001005223

• bladder cancer patient data

  This contains H3K27ac ChIP-seq, RNA-seq and HiC fastq files.

  Dataset EGAD00001007052

• Berlin Neuroblastoma Patient Genomic Data from Targeted Sequencing

  Targeted DNA sequencing data of paired primary and relapse tumor material taken from a pediatric patient with neuroblastoma.

  Dataset EGAD00001008564

• Sexual dimorphism AR RNASeq

  Human (n=34) and mice (n=68) melanoma tumor WXS dataset.

  Dataset EGAD00001008708

• Genomic Analysis of Focal Nodular Hyperplasia with Associated Hepatocellular Carcinoma Unveils its Malignant Potential

  Whole exome sequencing of FNH and two HCC compartments from a single patient, along with matched germline.

  Dataset EGAD00001007702

• NKI PRECSION Mutations

  38 samples with DCIS and matched recurrences sequenced with a targeted mutation panel on IonTorrent.

  Dataset EGAD00001008338

• Whole genome sequencing of a breast cancer cohort with known functional homologous recombination status

  41 breast cancer patients with known functional homologous recombination status (matched normal and tumor genomes, n=82)

  Dataset EGAD00001008027

• MTM-HD - fibroblast RNAseq

  MTM-HD - fibroblast RNAseq. 57 samples from controls, pre-HD and early-HD patients.

  Dataset EGAD00001009104

• MTM-HD - adipose tissue RNAseq

  MTM-HD - adipose tissue RNAseq. 60 samples from controls, pre-HD and early-HD patients

  Dataset EGAD00001009105

• Spatial TCR sequencing in breast cancer

  Spatial characterization by TCR sequencing in tumor core and matched stroma in seven cases of triple negative breast cancer.

  Dataset EGAD00001010203

• KUI6280

  RNA seq data normal and hypomethylation

  Dataset EGAD00001009887

• PRMS transcriptomes

  Transcriptome sequencing of three normal skeletal muscle and 15 pleomorphic rhabdomyosarcoma patient tumors.

  Dataset EGAD00001010915

• Optimizing single-cell transcriptomic discrimination of atopic dermatitis versus psoriasis vulgaris

  AD Samples 1 and 2. AD1 has 2 runs of additional sequencing, AD2 has 1 run of additional sequencing.

  Dataset EGAD00001011286

• BGISeq-500 sequencing of tumour-normal sample pairs from three mesothelioma patients

  Aligned, merged and deduplicated BAM files from BGISeq-500 sequencing of six samples: matched tumour-normal pairs from three melanoma patients.

  Dataset EGAD00001003221

• Patient-derived organoids from gastrointestinal cancers

  Patient-derived organoids model treatment response of metastatic gastrointestinal cancers (80 targeted exome capture samples and 2 whole-genome sequencing samples)

  Dataset EGAD00001003926

• Whole exome sequencing of HCCs in children with bile salt export pump deficiency

  Whole exome sequencing of 6 HCCs and matched background liver in children with bile salt export pump deficiency.

  Dataset EGAD00001000811

• RNA-seq sequence data from DNMT3A microcephalic dwarfism patients.

  RNA-seq data generated from cells from control individuals and individuals with de novo DNMT3A variants causing microcephalic dwarfism.

  Dataset EGAD00001004471

• DNMT3A MOPD patient ChIP-seq data

  ChIP-seq data from controls and patients with de novo DNMT3A mutations resulting in microcephalic primordial dwarfism.

  Dataset EGAD00001004473

• Irish Covid19 WGS Alignment Data

  Dataset contains 483 Irish origin Individuals with Covid19. For WGS, Alignment has been done using BWA-mem (sention v 201808.03 ) and BAM file generated.

  Dataset EGAD00001010098

• Transcriptome and epigenome characterization of BMP signaling effects on H3.3K27M DIPG

  We profiled transcriptome and epigenome of BMP signaling effects on H3.3K27M DIPG.

  Dataset EGAD00001007768

• Human Heredity and Health in Africa Data Access Committee

  Dac EGAC00001000648

• Heritable pulmonary arterial hypertension - new genetic findings and environmental triggers

  This dataset contains whole exome sequencing data of 13 family members of 5 heritable pulmonary arterial hypertension families.

  Dataset EGAD50000001817

• WGBS of stepwise-edited melanoma model

  This dataset contains WGBS of a stepwise-edited, human melanoma model including in vitro samples and corresponding xenografts.

  Dataset EGAD50000001317

• WGS of primary mediastinal large B-cell lymphoma

  This dataset includes 19 bamfiles of tumor, relapsed tumor and normal samples derived from 7 patients.

  Dataset EGAD50000000494

• Nanopore sequencing of brain tumor tissue obtained by cavitating ultrasonic aspiration

  This dataset contains 21 pediatric brain tumor cases which where obtained during surgery using a cavitating ultrasonic aspiration and submitted to nanopore whole genome sequencing.

  Dataset EGAD50000000269

• Whole-genome and transcriptome sequencing of seven patients with gene therapy-induced T-cell acute lymphoblastic leukemia

  Dataset EGAD00001006016

• RNA sequencing dataset of of explants treated with PRX3 inhibitor thiostrepton in mesothelioma

  This dataset includes 66 RNA sequences datasets of mesothelioma explants under three conditions: baseline, untreated control and thiostrepton treatment.

  Dataset EGAD50000002650

• Bulk exome sequencing of primary GBM - SF 10282

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10282

  Dataset EGAD00001002275

• Bulk exome sequencing of primary GBM - SF 10345

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10345

  Dataset EGAD00001002273

• Dataset WES of RRMM patients

  Dataset consists of forty vcf files, outcome of variant calling with caveman algorithm of matched bam file (TUMOR and NORMAL) of RRMM patients. Bam files were obtained from whole exome sequencing!

  Dataset EGAD00001005098

• Analysis of transcriptomic data

  Thirty six samples were sequenced and analysed.

  Dataset EGAD00001008864

• Whole Exome Sequencing of Localized Prostate Cancer Patients

  Whole exome sequencing of localized prostate cancer patients in this study contained pair tumor-normal samples and validated tumor content.

  Dataset EGAD00001008274

• MTM-HD - skeletal muscle RNAseq

  MTM-HD - skeletal muscle RNAseq. 57 samples from controls, pre-HD and early-HD patients.

  Dataset EGAD00001009106

• RNAseq following stent placement and removal in a porcine model 

  This dataset includes 2*76bp RNA-seq reads from 9 pigs sequenced using Illumina NextSeq500.

  Dataset EGAD00001009783

• Patient WGS

  5 samples as fastq file pairs. 1 solid tumour sample from patient #1105 with matched blood, and 2 solid tumour samples from patient #1177 with matched blood.

  Dataset EGAD00001009660

• KUI6926

  WGS data normal and hypomethylation

  Dataset EGAD00001009884

• TDB-mediated activation of NK cells

  transcriptome analysis of NK cells sorted from PBMCs at baseline and after addition of a CD20 (B cell)-targeted T cell dependent bispecific antibody (TDB)

  Dataset EGAD00001010895

• Molecular mechanism of Vd2 T cells upon mevalonate metabolism inhibition

  Raw molecular data of Vd2 T cells upon treatment with different stimuli and mevalonate pathway inhibitors.

  Dataset EGAD00001011322