22938 results for "ega"

in 38.82 milliseconds.

• 20200417_PNET_methylation_paper

  Illumina platform RNA-seq data from 47 Pancreatic neuroendocrine tumour samples

  Dataset EGAD00001006063

• Accelerated single cell seeding in relapsed multiple myeloma

  25 Whole genome sequencing data cases

  Dataset EGAD00001006119

• Phylogenetic reconstruction of breast cancer

  This dataset contains the fastq files used for this study

  Dataset EGAD00001006121

• T200 sequencing Phase Ib of olaparib and capivasertib

  T200 sequencing (Phase Ib of olaparib and capivasertib)

  Dataset EGAD00001006841

• Data upcycling, powered by EGA

  In 2012 a collaborative effort headed by the teams of Carlos Caldas in Cambridge, UK and Samuel Aparicio, Canada, produced a pivotal study aimed at defining the mutational landscape of breast cancer. They gathered a collection of over 2000 breast cancer samples (METABRIC) associated with long-term clinical follow-up. They delineated an array of inherited and somatically acquired genetic variants and associated them to gene expression. This led to the identification of putative cancer-driving events and improved stratification of breast cancer patients. The study elicited huge attention and was tackled as herculean effort by fellow researchers. Cristina Curtis and her colleagues deposited the data in the EGA archive (EGAS00000000083). What they probably could not foresee is that their data would be reused more than 100 times, becoming one of the most downloaded datasets at EGA. In 2015, Frederik S. Varn and colleagues accessed the above-mentioned data from the New Hampshire, USA, to correlate it to transcriptional programs of hematopoietic cells infiltrated in breast tumours and found that those can influence patients' prognosis. Their findings, published in Nature Communications, improved the understanding of the interplay between immune system and cancer. Again, in 2017 the dataset was downloaded by an Italian/Polish collaboration and used to corroborate their mechanistic study that demonstrate how a long non-coding RNA (lncRNA) is aberrantly localized into the chromatin, where it modulates oncogenic isoforms expression, thus contributing to breast cancer. To date, the METABRIC dataset has been reused to contribute to 147 publications. Its impact on breast cancer research is incalculable, and it even spread beyond that, with recent contributions to the understanding of pan-cancer mechanisms and features. Some of the publications are translating into improvements in diagnosis and treatment of different types of breast cancer. This is just an example of how data upcycling can amplify the potential of any dataset, well past the scope of its creation, the imagination of its owners and any geographical border. At EGA, we are proud to empower such fruitful worldwide cycles of knowledge, providing a platform that enables safe sharing of sensitive genetic data.

  Blog data-upcycling-powered-by-ega

• Glioma Genomics Committee

  Dac EGAC00001000153

• MSI-Exome-DAC Team Microsatellites Instability and Cancer, INSERM Hospital Saint-Antoine, Paris 12, France Carte d'identité des tumeurs, French league against cancer, Paris France

  Dac EGAC00001000665

• UCSF Sebaceous Carcinoma DAC for review of sequence data release from manuscript in Nature Communications, based in the UCSF Departments of Dermatology and Pathology

  Dac EGAC00001000850

• Data access committee (DAC) in the Graduate School of Medical Science and Engineering (GSMSE) at Korea Advanced Institute of Science and Technology (KAIST)

  Dac EGAC00001001643

• Brain Tumor UCSF DAC

  Dac EGAC00001001682

• DAC of The polarity and specificity of antiviral T lymphocyte responses determine susceptibility to SARS-CoV-2 infection in cancer patients and healthy individuals

  Dac EGAC00001002517

• Early on-treatment changes in circulating tumor DNA fraction and response to enzalutamide or abiraterone in metastatic castration-resistant prostate cancer - Data Access Committee

  Dac EGAC00001003128

• EGAD00000000012

  WTCCC1 project Multiple Sclerosis (MS) samples

  Dataset EGAD00000000012

• EGAD00000000048

  Sequencing data from oestrogen-receptor-alpha-positive metastatic lobular breast cancer sample

  Dataset EGAD00000000048

• EGAD00010000722

  Pilot experiment on functional genomics in osteoarthritis (coreex)

  Dataset EGAD00010000722

• EGAD00010000232

  WTCCC2 samples from Type 2 Diabetes Cohort

  Dataset EGAD00010000232

• EGAD00010000296

  1958BC control samples only (Hap550)

  Dataset EGAD00010000296

• EGAD00010000387

  Cambridge control samples using a 1.2M genotyping chip from Illumina

  Dataset EGAD00010000387

• CLL cancer Sample Sequencing

  CLL cancer Sample Sequencing

  Dataset EGAD00001000004

• Various Cancer Fusion Gene Sequencing

  Various Cancer Fusion Gene Sequencing

  Dataset EGAD00001000005

• ADCC Rearrangement Screen

  ADCC Rearrangement Screen

  Dataset EGAD00001000062

• Multifocal Breast Project

  Multifocal Breast Project

  Dataset EGAD00001000068

• Gastric and Esophageal tumour rearrangement screen

  Gastric and Esophageal tumour rearrangement screen

  Dataset EGAD00001000075

• Acute Myeloid Leukemia Sequencing

  Acute Myeloid Leukemia Sequencing

  Dataset EGAD00001000095

• Myelodysplastic Syndrome Exome Sequencing

  Myelodysplastic Syndrome Exome Sequencing

  Dataset EGAD00001000117

• DATA_SET_Comparing_sequencing_four_proto-typical_Burkitt_lymphomas_BL_IG-MYC_translocation

  DATA_SET_Comparing_sequencing_four_proto-typical_Burkitt_lymphomas_BL_IG-MYC_translocation

  Dataset EGAD00001000176

• Whole genome sequencing of colon samples

  Whole genome sequencing of colon samples

  Dataset EGAD00001000214

• UK10K_NEURO_ABERDEEN REL-2012-07-05

  EGAD00001000227_UK10K_NEURO_ABERDEEN_REL_2012_07_05

  Dataset EGAD00001000227

• UK10K_NEURO_EDINBURGH REL-2012-07-05

  EGAD00001000233_UK10K_NEURO_EDINBURGH_REL_2012_07_05

  Dataset EGAD00001000233

• UK10K_NEURO_GURLING REL-2012-07-05

  EGAD00001000237_UK10K_NEURO_GURLING_REL_2012_07_05

  Dataset EGAD00001000237

• De novo mutations in schizophrenia

  De novo mutations in schizophrenia

  Dataset EGAD00001000251

• DATA FILES FOR SJHYPO

  Hypodiploid acute lymphoblastic leukemia whole genome sequencing

  Dataset EGAD00001000260

• RNA Editing Transcriptome

  Transcriptome sequencing data of tumor and 10 matched normal samples of the EGAS00001000495 project

  Dataset EGAD00001000627

• WTCCC3_Pre-Eclampsia

  WTCCC3 UK maternal cases of pre-eclampsia

  Dataset EGAD00010000854

• Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - side_cases_barretts

  Dataset EGAD00001001379

• REL-2016-09_EGAS00001000867

  HipSci - Healthy Normals - Expression Array - September 2016

  Dataset EGAD00010001143

• REL-2016-10_EGAS00001001274

  HipSci - Bardet-Biedl Syndrome - Methylation Array - October 2016

  Dataset EGAD00010001145

• RNA-seq data from diagnosis and relapse samples of Down Syndrome acute lymphoblastic leukemia.

  Dataset EGAD00001003280

• Transcriptional regulatory networks of tumor-associated macrophages that drive malignancy in mesenchymal glioblastoma

  Dataset EGAD00001003324

• Transcriptome profiling by array after Kit FFPEsensation WT Affymetrix

  Affymetrix GeneChip® Human Transcriptome Array 2.0

  Dataset EGAD00010001275

• REL-2017-07_866

  HipSci - Healthy Normals - Genotyping Array - July 2017

  Dataset EGAD00010001328

• ega_SJLIFE_BMD_ALL

  A discovery cohort of 856 adult survivors of pediatric ALL

  Dataset EGAD00010001396

• miRNA profiling of human plucked hair follicle

  miRNA profiling of human plucked hair follicle from frontal and occipital scalp

  Dataset EGAD00010001500

• UKHLS_DNAmethylation

  Bisulfite Converted DNA obtained from Whole Blood analysed on IlluminaHumanMethylationEPIC BeadChip microarrays processed with bigmelon R package

  Dataset EGAD00010001521

• EGAS00001001728_REL-2016-04

  HipSci - Embryonic Stem Cells - Methylation Array - April 2016

  Dataset EGAD00010000909

• EGAS00001001730_REL-2016-04

  HipSci - Embryonic Stem Cells - Expression Array - April 2016

  Dataset EGAD00010000910

• chr6_allsamples_imputated

  Chromosome 6 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002539

• REL-2014-11_3

  HipSci - Healthy Normals - Expression Array - November 2014

  Dataset EGAD00010000775

• TwinsUK_EpiTwin_DNA_Methylome

  MeDIP-seq RPM chromsome BED files for Peripheral Blood from EPITWIN Project (Columns 4-4353 represent samples)

  Dataset EGAD00010000983

• leukemia_2 SNP6.0

  Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array

  Dataset EGAD00010001814

• germline_2 SNP6.0

  Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array

  Dataset EGAD00010001813

• Transcriptome sequencing of Gingivo-buccal Cancer : ICGC-India Project_2020

  Dataset EGAD00001006003

• BLEMD (arrays set)

  Circulating tumor cells for comprehensive and multiregional non-invasive genetic characterization of multiple myeloma (arrays set)

  Dataset EGAD00010001857

• dataset_raw_NativesAmericans_LDGH_august2020

  Genome-wide data for 98 Native American individuals from Andes and Amazon

  Dataset EGAD00010001958

• Dataset for study EGAS00001004946 (Endothelium-derived stromal cells contribute to bone marrow niche formation)

  Dataset EGAD00001006914

• Liv_PTB_Transcriptomics

  Liverpool Preterm Birth Biomarker Study Transcriptomics

  Dataset EGAD00010002065

• SNP Array Data for EGAS00001004666

  SNP Array Data for EGAS00001004666

  Dataset EGAD00010002257

• BreastCancer_Miroarrays

  Genotyping array data for breast cancer and matched normal mammary gland samples

  Dataset EGAD00010002251

• chr11_allsamples_imputated

  Chromosome 11 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002538

• chr14_allsamples_imputated

  Chromosome 14 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002527

• chr7_allsamples_imputated

  Chromosome 7 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002528

• chr13_allsamples_imputated

  Chromosome 13 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002531

• chr4_allsamples_imputated

  Chromosome 4 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002529

• chr5_allsamples_imputated

  Chromosome 5 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002536

• chr10_allsamples_imputated

  Chromosome 10 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002530

• chr21_allsamples_imputated

  Chromosome 21 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002532

• chr16_allsamples_imputated

  Chromosome 16 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002534

• chr20_allsamples_imputated

  Chromosome 20 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002537

• Transcriptome of (peripheral blood), from donor Sample A, replicate 1 Freezing replicates

  Freezing replicates

  Dataset EGAD00001010084

• Transcriptome of (peripheral blood), from donor Sample A, replicate 2 Freezing replicates

  Freezing replicates

  Dataset EGAD00001010085

• Transcriptome of (peripheral blood), from donor Sample A, replicate 1 Technical replicates

  Technical replicates

  Dataset EGAD00001010082

• Transcriptome of (peripheral blood), from donor Sample A, replicate 2 Technical replicates

  Technical replicates

  Dataset EGAD00001010083

• Gentoypes_Lesotho

  Individuals genotyped on the Illumina GSA v2. Autosome and X chromosome.

  Dataset EGAD00010002468

• Methylation profiles in blood (breast cancer cases)

  Raw methylation data from blood samples in breast cancer cases.

  Dataset EGAD00010002470

• HGSOC genome-wide SNP (project ITH)

  SNP array genotyping of multi-site HGSOC samples

  Dataset EGAD00010002482

• C3_PBCR-QC

  WTCCC3_Primary Biliary Cirrhosis Replication Post-QC

  Dataset EGAD00010000928

• chr9_allsamples_imputated

  Chromosome 9 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002535

• chr12_allsamples_imputated

  Chromosome 12 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002517

• chr22_allsamples_imputated

  Chromosome 22 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002518

• chr8_allsamples_imputated

  Chromosome 8 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002519

• chr18_allsamples_imputated

  Chromosome 18 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002520

• chr3_allsamples_imputated

  Chromosome 3 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002521

• chr2_allsamples_imputated

  Chromosome 2 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002523

• chr19_allsamples_imputated

  Chromosome 19 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002524

• chr1_allsamples_imputated

  Chromosome 1 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002525

• LOPEZ_2019.vcf.gz

  Genotype data for new samples in Lopez et al 2021

  Dataset EGAD00010002100

• MalariaGEN case-control study in the Gambia

  MalariaGEN case-control study in the Gambia.

  Study EGAS00000000026

• Inherited Corneal Dystrophies - Institute of Ophthalmology, University College London (IoO, UCL)

  DAC created for access to data published by Dr. Alice E Davidson

  Dac EGAC50000000213

• ITER-FIISC Data Access Committee

  DAC for whole-genome variant calling data of individuals from the study of allergic diseases in the Canary Islands.

  Dac EGAC50000000180

• RNAseq for 190 AML patients

  This dataset contains 190 fastq files sequenced with Illumina HiSeq500.

  Dataset EGAD50000000490

• AfricanNeo_F dataset

  Dataset: AfricanNeo_F; genotyping batch: OE-0808_150625; array: Illumina Omni2.5-Octo BeadChip.

  Dataset EGAD50000000007

• bulk RNA-seq data

  a total number of 99 bulk RNA-seq lymphoma samples

  Dataset EGAD50000000631

• resistance to FGFR inhibitor in FGR2 cancers from DNA sequencing

  WES from FGR2 resistant patient tumors

  Study EGAS50000000305

• Heart

  Whole-Exome-Sequencing of 5 pooled patients for SNP-based demultiplexing

  Study EGAS50000000655

• Colorectal cancer functional annotation - RNAseq

  RNA-seq data from multiple colorectal cancer cell lines

  Study EGAS50000000208

• Single nuclei sequencing (snRNA-seq) of patient tumours

  snRNA-seq was performed on patient samples

  Study EGAS50000000617

• High throughput profiling of undifferentiated pleomorphic sarcomas identifies two main subgroups with distinct immune contexture, clinical outcome and sensitivity to targeted therapies

  Study EGAS00001004612

• Mutation and Microsatellite Burden Predict Response to PD-1 Inhibition in Children with Germline DNA Replication Repair Deficiency: An Observational Registry Study

  Study EGAS00001005579

• Circulating tumor DNA, pathological and immunologic responses to neoadjuvant nivolumab or nivolumab plus relatlimab and chemoradiotherapy in resectable esophageal/gastroesophageal junction cancer

  Study EGAS00001007299

• Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths

  Study EGAS00001007402