22938 results for "ega"

in 31.56 milliseconds.

• Targeted capture ctDNA Library CRCQV34Run005-9

  Targeted capture ctDNA Library CRCQV34Run005-9 from patient PBC0002429, TNBC FFPE sample

  Dataset EGAD00001010352

• Reference epigenome Islet-derived_MSC08 miRNA-Seq data generated from KEP study

  Islet-derived_MSC08 miRNA-Seq single end data

  Dataset EGAD00001007882

• Reference epigenome Islet-derived_iPSC04 miRNA-Seq data generated from KEP study

  Islet-derived_iPSC04 miRNA-Seq single end data

  Dataset EGAD00001007883

• oxBS-seq for APL

  Oxidative bisulfite sequencing (oxBS-Seq) for APL

  Dataset EGAD00001008135

• WGBS for APL

  Whole genome bisulfite sequencing (WGBS) for APL

  Dataset EGAD00001008136

• Targeted capture ctDNA Library CRCQV34Run005-12

  Targeted capture ctDNA Library CRCQV34Run005-12 from patient PBC0001224, TNBC FFPE sample

  Dataset EGAD00001010343

• Targeted capture ctDNA Library CRCQV34Run005-8

  Targeted capture ctDNA Library CRCQV34Run005-8 from patient PBC0002108, TNBC FFPE sample

  Dataset EGAD00001010351

• Targeted capture ctDNA Library CRCQV40Run027-20

  Targeted capture ctDNA Library CRCQV40Run027-20 from patient PBC0004565, TNBC FFPE sample

  Dataset EGAD00001010393

• Targeted capture ctDNA Library CRCQV40Run027-22

  Targeted capture ctDNA Library CRCQV40Run027-22 from patient PBC0005116, TNBC FFPE sample

  Dataset EGAD00001010394

• Targeted capture ctDNA Library CRCQV42Run021-12

  Targeted capture ctDNA Library CRCQV42Run021-12 from patient PBC0001653, TNBC FFPE sample

  Dataset EGAD00001010435

• Targeted capture ctDNA Library CRCQV42Run020-5

  Targeted capture ctDNA Library CRCQV42Run020-5 from patient PBC0001315, TNBC FFPE sample

  Dataset EGAD00001010431

• Targeted capture ctDNA Library CRCQV42Run022-19

  Targeted capture ctDNA Library CRCQV42Run022-19 from patient PBC0002680, plasma 6 month repeat sample

  Dataset EGAD00001010454

• Targeted capture ctDNA Library CRCQV42Run024-13

  Targeted capture ctDNA Library CRCQV42Run024-13 from patient PBC0001306, TNBC FFPE sample

  Dataset EGAD00001010466

• Targeted capture ctDNA Library CRCQV42Run026-16

  Targeted capture ctDNA Library CRCQV42Run026-16 from patient PBC0005064, TNBC FFPE sample

  Dataset EGAD00001010489

• Dataset for iAMP21 scRNA-seq

  10x Genomics 5' library scRNA-seq data for 4 iAMP21 patients

  Dataset EGAD00001009504

• WGS data set used in the study, 2 samples

  WGS data set used in the study, 2 samples

  Dataset EGAD00001007966

• Targeted capture ctDNA Library CRCQV42Run42-13

  Targeted capture ctDNA Library CRCQV42Run42-13 from patient PBC0001467, TNBC FFPE sample

  Dataset EGAD00001010825

• RNA-Seq for academic use only

  RNA-Seq transcriptome data is only for academic use.

  Dataset EGAD00001009675

• ML modeling data & code

  Rmarkdown code, PDF, and Rdata file to recapitulate the paper's primary figures and machine learning model development.

  Dataset EGAD00001009764

• Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (ONT)

  Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (ONT)

  Dataset EGAD00001009632

• Targeted capture ctDNA Library CRCQV34Run015-20

  Targeted capture ctDNA Library CRCQV34Run015-20 from patient PBC0001432, TNBC FFPE sample

  Dataset EGAD00001010382

• Targeted capture ctDNA Library CRCQV42Run021-4

  Targeted capture ctDNA Library CRCQV42Run021-4 from patient PBC0001328, TNBC FFPE sample

  Dataset EGAD00001010446

• Footprint_batch02

  Intrahepatic cholangiocyte organoid clone from patients with chronic alcohol consumption, NASH (nonalcoholic steatohepatitis), and PSC (primary sclerosing cholangitis)

  Dataset EGAD00001007775

• Targeted capture ctDNA Library CRCQV34Run005-11

  Targeted capture ctDNA Library CRCQV34Run005-11 from patient PBC0002595, TNBC FFPE sample

  Dataset EGAD00001010342

• Reference epigenome Islet-derived_MSC08 mRNA-Seq data generated from KEP study

  Islet-derived_MSC08 mRNA-Seq paired end data

  Dataset EGAD00001007879

• Reference epigenome Islet-derived_iPSC04 mRNA-Seq data generated from KEP study

  Islet-derived_iPSC04 mRNA-Seq paired end data

  Dataset EGAD00001007880

• Reference epigenome Islet-derived_MSC06 miRNA-Seq data generated from KEP study

  Islet-derived_MSC06 miRNA-Seq single end data

  Dataset EGAD00001007881

• Targeted capture ctDNA Library CRCQV34Run015-22

  Targeted capture ctDNA Library CRCQV34Run015-22 from patient PBC0001673, TNBC FFPE sample

  Dataset EGAD00001010383

• Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (pacBio)

  Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (pacBio)

  Dataset EGAD00001009631

• Long-term organoid culture of a small intestinal neuroendocrine tumor

  organoid and tissue bam files from rna-seq experiment

  Dataset EGAD00001010175

• Targeted capture ctDNA Library CRCQV34Run005-10

  Targeted capture ctDNA Library CRCQV34Run005-10 from patient PBC0002459, TNBC FFPE sample

  Dataset EGAD00001010341

• Targeted capture ctDNA Library CRCQV34Run005-15

  Targeted capture ctDNA Library CRCQV34Run005-15 from patient PBC0002824, TNBC FFPE sample

  Dataset EGAD00001010346

• Targeted capture ctDNA Library CRCQV34Run005-18

  Targeted capture ctDNA Library CRCQV34Run005-18 from patient PBC0001845, TNBC FFPE sample

  Dataset EGAD00001010347

• Targeted capture ctDNA Library CRCQV34Run005-20

  Targeted capture ctDNA Library CRCQV34Run005-20 from patient PBC0002680, TNBC FFPE sample

  Dataset EGAD00001010348

• Targeted capture ctDNA Library CRCQV34Run005-4

  Targeted capture ctDNA Library CRCQV34Run005-4 from patient PBC0001627, TNBC FFPE sample

  Dataset EGAD00001010349

• Targeted capture ctDNA Library CRCQV34Run005-5

  Targeted capture ctDNA Library CRCQV34Run005-5 from patient PBC0002062, TNBC FFPE sample

  Dataset EGAD00001010350

• Targeted capture ctDNA Library CRCQV34Run007-24

  Targeted capture ctDNA Library CRCQV34Run007-24 from patient PBC0001051, TNBC FFPE sample

  Dataset EGAD00001010361

• Targeted capture ctDNA Library CRCQV34Run005-13

  Targeted capture ctDNA Library CRCQV34Run005-13 from patient PBC0002383, TNBC FFPE sample

  Dataset EGAD00001010344

• Targeted capture ctDNA Library CRCQV34Run015-24

  Targeted capture ctDNA Library CRCQV34Run015-24 from patient PBC0002255, TNBC FFPE sample

  Dataset EGAD00001010385

• Targeted capture ctDNA Library CRCQV34Run015-23

  Targeted capture ctDNA Library CRCQV34Run015-23 from patient PBC0001255, TNBC FFPE sample

  Dataset EGAD00001010384

• Targeted capture ctDNA Library CRCQV40Run027-18

  Targeted capture ctDNA Library CRCQV40Run027-18 from patient PBC0004350, TNBC FFPE sample

  Dataset EGAD00001010391

• Targeted capture ctDNA Library CRCQV40Run027-19

  Targeted capture ctDNA Library CRCQV40Run027-19 from patient PBC0004414, TNBC FFPE sample

  Dataset EGAD00001010392

• Targeted capture ctDNA Library CRCQV40Run027-17

  Targeted capture ctDNA Library CRCQV40Run027-17 from patient PBC0004076, TNBC FFPE sample

  Dataset EGAD00001010390

• Targeted capture ctDNA Library CRCQV42Run017-24

  Targeted capture ctDNA Library CRCQV42Run017-24 from patient PBC0002294, TNBC FFPE sample

  Dataset EGAD00001010414

• Targeted capture ctDNA Library CRCQV42Run019-6

  Targeted capture ctDNA Library CRCQV42Run019-6 from patient PBC0001295, TNBC FFPE sample

  Dataset EGAD00001010423

• Targeted capture ctDNA Library CRCQV42Run019-8

  Targeted capture ctDNA Library CRCQV42Run019-8 from patient PBC0001304, TNBC FFPE sample

  Dataset EGAD00001010424

• Targeted capture ctDNA Library CRCQV42Run020-4

  Targeted capture ctDNA Library CRCQV42Run020-4 from patient PBC0001312, TNBC FFPE sample

  Dataset EGAD00001010430

• Targeted capture ctDNA Library CRCQV42Run021-10

  Targeted capture ctDNA Library CRCQV42Run021-10 from patient PBC0001470, TNBC FFPE sample

  Dataset EGAD00001010433

• Targeted capture ctDNA Library CRCQV42Run021-9

  Targeted capture ctDNA Library CRCQV42Run021-9 from patient PBC0001323, TNBC FFPE sample

  Dataset EGAD00001010449

• Targeted capture ctDNA Library CRCQV42Run023-19

  Targeted capture ctDNA Library CRCQV42Run023-19 from patient PBC0002383, plasma baseline repeat sample

  Dataset EGAD00001010462

• Targeted capture ctDNA Library CRCQV42Run023-20

  Targeted capture ctDNA Library CRCQV42Run023-20 from patient PBC0001224, plasma baseline repeat sample

  Dataset EGAD00001010463

• Targeted capture ctDNA Library CRCQV42Run022-8

  Targeted capture ctDNA Library CRCQV42Run022-8 from patient PBC0002826, TNBC FFPE sample

  Dataset EGAD00001010459

• Targeted capture ctDNA Library CRCQV42Run024-14

  Targeted capture ctDNA Library CRCQV42Run024-14 from patient PBC0002853, TNBC FFPE sample

  Dataset EGAD00001010467

• Targeted capture ctDNA Library CRCQV42Run025-19

  Targeted capture ctDNA Library CRCQV42Run025-19 from patient PBC0003364, TNBC FFPE sample

  Dataset EGAD00001010482

• Targeted capture ctDNA Library CRCQV42Run025-5

  Targeted capture ctDNA Library CRCQV42Run025-5 from patient PBC0001589, TNBC FFPE sample

  Dataset EGAD00001010483

• Targeted capture ctDNA Library CRCQV42Run025-7

  Targeted capture ctDNA Library CRCQV42Run025-7 from patient PBC0003334, TNBC FFPE sample

  Dataset EGAD00001010485

• Targeted capture ctDNA Library CRCQV42Run029-7

  Targeted capture ctDNA Library CRCQV42Run029-7 from patient PBC0004173, TNBC FFPE sample

  Dataset EGAD00001010519

• Targeted capture ctDNA Library CRCQV42Run034-24

  Targeted capture ctDNA Library CRCQV42Run034-24 from patient PBC0001396, TNBC FFPE sample

  Dataset EGAD00001010572

• Targeted capture ctDNA Library CRCQV42Run036-10

  Targeted capture ctDNA Library CRCQV42Run036-10 from patient PBC0002062, plasma 21 month sample

  Dataset EGAD00001010592

• Targeted capture ctDNA Library CRCQV42Run036-20

  Targeted capture ctDNA Library CRCQV42Run036-20 from patient PBC0003364, plasma 15 month sample

  Dataset EGAD00001010599

• Targeted capture ctDNA Library CRCQV42Run041-8

  Targeted capture ctDNA Library CRCQV42Run041-8 from patient PBC0001404, TNBC FFPE sample

  Dataset EGAD00001010638

• Targeted capture ctDNA Library CRCQV42Run42-14

  Targeted capture ctDNA Library CRCQV42Run42-14 from patient PBC0001375, TNBC FFPE sample

  Dataset EGAD00001010826

• Whole exome sequencing data for paired non-serous endometrial and ovarian carcinomas from 27 patients with concurrent tumours.

  Dataset for Synchronous Endometrial and Ovarian Cancer

  Dataset EGAD00001015680

• TGL49_HBC cfMeDIP

  Cell-free methylated DNA immunoprecipitation sequencing of plasma samples from healthy control patients.

  Dataset EGAD00001009999

• Targeted capture ctDNA Library CRCQV42Run022-22

  Targeted capture ctDNA Library CRCQV42Run022-22 from patient PBC0002062, plasma 12 month repeat sample

  Dataset EGAD00001010456

• Targeted capture ctDNA Library CRCQV42Run035-20

  Targeted capture ctDNA Library CRCQV42Run035-20 from patient PBC0003334, plasma 6 month sample

  Dataset EGAD00001010585

• STAG2-ChIP-Seq of STAG2-mutated and cohesin-wildtype adult AMLs

  ChIP-Seq targeting the cohesin subunit STAG2 in STAG2-mutant or cohesin wildtype adult AMLs.

  Dataset EGAD00001011205

• GBM-Space: Joint Transcriptome and Chromatin Accessibility Profiling of Glioblastoma (10x Genomics - Multiome)

  GBM-Space: Joint Transcriptome and Chromatin Accessibility Profiling of Glioblastoma (10x Genomics - Multiome)

  Dataset EGAD00001015526

• Oulu Dyslipidemia families

  These samples include exome sequences of family members with dyslipidemias from northern Finnish origin.

  Dataset EGAD00001000411

• ICGC medulloblastoma whole genome sequencing data, ICGC release 16

  ICGC medulloblastoma whole genome sequencing data, ICGC release 16

  Dataset EGAD00001000816

• HipSci - Healthy Normals - RNA Sequencing - May 2014

  HipSci - Healthy Normals - RNA Sequencing - May 2014

  Dataset EGAD00001000897

• Targeted gene sequencing of gallbladder cancer

  The dataset includes the targeted gene sequencing data from51 pairs of gallbladder caner tissues and patient-matched normal tissues.

  Dataset EGAD00001000902

• GIST SSGXVIII trial targeted gene sequencing

  Targeted cancer gene sequencing of samples enrolled in the SSGXVIII trial from Finland.

  Dataset EGAD00001001427

• WES

  WES was performed on 2 TURP, 6 biopsies, 1 CDX, 1 cell line, 6 CTCs, 1 DNA germline and 1WBC from prostate cancer

  Dataset EGAD00001006009

• WGS data of serially passaged TIC-enriched spheres of colorectal cancer

  WGS data of serially passaged TIC-enriched spheres of colorectal cancer

  Dataset EGAD00001006265

• SF12374

  SF12374 snATAC Oligodendroglioma. Tumor Location: Right frontal. Age: 33. Sex: Male.

  Dataset EGAD00001006315

• alopecia areata

  exome sequencing files from 25 alopecia areata samples from spain.

  Dataset EGAD00001006370

• RNA-seq for IgA BMPC project

  7 RNA-seq samples in total: CD19n_IgAn (x2) , CD19n_IgAp (x2) , CD19p_IgAn (x1), CD19p_IgAp (x2)

  Dataset EGAD00001006862

• Single cell sequencing of ovarian cancer

  Single cell sequencing of 12 ovarian cancer biopsies from 7 patients.

  Dataset EGAD00001006898

• Methylation tumour profiles for EGAS00001004572

  Bulk methylation tumour profiles from infinium methylation epic bead kit in EGAS00001004572

  Dataset EGAD00001006909

• HipSci - Bleeding and Platelet Disorders - Exome Sequencing - July 2017

  HipSci - Bleeding and Platelet Disorders - Exome Sequencing - July 2017

  Dataset EGAD00001003519

• First datasets available in the Federated EGA Network

  In February 2024, a great milestone was reached for the human omics data community: the first datasets are now available in the Federated European Genome-phenome Archive (FEGA). These datasets - hosted by national nodes in Poland, Norway, and Sweden - are discoverable in the EGA portal and accessible according to national laws. These datasets include: From FEGA Poland - The Genomic Map Of Poland From FEGA Norway - CRCbiome: Gut metagenome of Norwegian screening participants using FIT sampling Also from FEGA Norway - Single cell transcriptomics in expanded Tregs of APS-1 patients From FEGA Sweden - A Combined Omics and Tissue Biobank for Paediatric Cancers The establishment of these datasets represents a significant step towards achieving the broader objectives of the FEGA; to facilitate the sharing of high-quality human genomic and phenotypic data across borders. “The value for users is twofold: it becomes easier to make data available securely compared to storing data locally, and data becomes easier to find for other researchers. The possibility of reuse improves the chances of both verifying scientific discoveries and reaching groundbreaking conclusions, of benefit to the research community and later also patients,” said Anna Hagwall, project manager and head of human data at FEGA Sweden, NBIS. About Federated EGA FEGA was launched in 2022 as a network to store and lawfully share sensitive human omics data safely. It relies on the technology originally developed by the EGA and support from ongoing collaborations with ELIXIR - a European life sciences infrastructure. FEGA has contributed to and benefitted from the implementation of community standards for sensitive data management including those developed by the Global Alliance for Genomics and Health (GA4GH). “The FEGA concept and the development of the Nordic FEGA nodes have been made possible thanks to several projects coordinated by NeIC,” said Kjell Petersen, FEGA Norway technical lead. Managing human omics data is challenging due to its sheer size and privacy concerns, often resulting in restrictions on how and where sensitive data can be shared. The FEGA network follows a federated data access model whereby sensitive data is stored securely within a local or national jurisdiction, while discovery across the network for data of interest is enabled via a central portal. As of February 2024, the FEGA network comprises seven European national nodes with tens of additional national partners working towards establishing a FEGA node. As the FEGA network continues to onboard nodes from around the world, populated with more and more data, we move closer to a vision of a truly global resource for discovery of and access to sensitive human omics data to accelerate disease research and improve human health. "The Federated EGA network is entering a key phase where the first research datasets are now available across the network. In coming years, we look forward to expanding these datasets to cover key areas such as cancer and rare diseases for the benefit of patients" said Thomas Keane, Group Leader at EMBL-EBI.

  Blog first-datasets-available-in-Federated-EGA

• Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)

  Dac EGAC00001000219

• EGAD00000000120

  WTCCC2 project Multiple Sclerosis (MS) samples

  Dataset EGAD00000000120

• EGAD00010000584

  WTCCC2 Glaucoma samples using Illumina 670k array

  Dataset EGAD00010000584

• EGAD00010000644

  Affymetrix SNP6.0 cancer cell line exome sequencing data

  Dataset EGAD00010000644

• EGAD00010000234

  WTCCC2 samples from 1958 British Birth Cohort

  Dataset EGAD00010000234

• EGAD00010000250

  NBS control samples

  Dataset EGAD00010000250

• Investigation of the genetic basis of the rare syndrome Post-Transfusion Purpura (PTP)

  Investigation of the genetic basis of the rare syndrome Post-Transfusion Purpura (PTP)

  Dataset EGAD00001000026

• 20 Matched Pair Breast Cancer Genomes

  20 Matched Pair Breast Cancer Genomes

  Dataset EGAD00001000082

• UK10K_OBESITY_SCOOP REL-2011-07-14

  UK10K OBESITY REL-2011-07-14

  Dataset EGAD00001000151

• UK10K_RARE_THYROID REL-2012-01-13

  UK10K_RARE_THYROID REL-2012-01-13

  Dataset EGAD00001000152

• UK10K_RARE_CHD REL-2012-01-13

  UK10K_RARE_CHD REL-2012-01-13

  Dataset EGAD00001000178

• UK10K_RARE_THYROID REL-2012-02-22

  UK10K_RARE_THYROID REL-2012-02-22

  Dataset EGAD00001000187

• UK10K_RARE_CHD REL-2012-02-22

  UK10K_RARE_CHD REL-2012-02-22

  Dataset EGAD00001000192

• UK10K_RARE_THYROID REL-2012-07-05

  UK10K_RARE_THYROID REL-2012-07-05

  Dataset EGAD00001000208

• UK10K_RARE_CHD REL-2012-07-05

  UK10K_RARE_CHD REL-2012-07-05

  Dataset EGAD00001000210

• UK10K_RARE_CHD REL-2012-11-27

  UK10K_RARE_CHD REL-2012-11-27

  Dataset EGAD00001000294

• UK10K_RARE_THYROID REL-2012-11-27

  UK10K_RARE_THYROID REL-2012-11-27

  Dataset EGAD00001000329

• somatic mitochondrial DNA late metastatic samples

  Dataset EGAD00001001015