23249 results for "ega"

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• Single-cell G&T sequencing - Genomic data

  Single-cell G&T seq from an untreated PDX mouse with neuroblastoma (MYCN amplified).

  Dataset EGAD50000001513

• DAC Pr. Eric Deutsch

  Antonin LEVY Antonin.LEVY@gustaveroussy.fr Eric DEUTSCH Eric.DEUTSCH@gustaveroussy.fr Daphné MOREL Daphne.MOREL@gustaveroussy.fr Clara BECHET Clara.BECHET@gustaveroussy.fr Lisa BOUARROUDJ Lisa.BOUARROUDJ@gustaveroussy.fr Melis CARDON Melis.CARDON@gustaveroussy.fr Marc DELOGER Marc.DELOGER@gustaveroussy.fr

  Dac EGAC50000000318

• UCL Translation Uro-Oncology Data Access Committee will govern access to data generated from the Translation Uro-Oncology groups of the UCL Cancer Institute and UCL Division of Surgery & Interventional Science

  Dac EGAC00001000471

• PASCAL-MID Data Access Committee

  DAC for the center of Personalized Approach to Genome Editing of Stem Cells for Autotransplantation of Monogenic Immunodeficiencies (PASCAL-MID) at Aarhus University and Aarhus University Hospital

  Dac EGAC50000000680

• Genomic and epigenomic sequencing data on human samples of Institut Curie.

  Total RNA sequencing, whole exome sequencing, whole genome sequencing and whole genome bisulfite sequencing on human samples collected at Institut Curie, France.

  Dac EGAC50000000356

• Pancreatic Cancer NGS WGS data

  Whole genome sequencing data for Pancreatic Cancer Samples exploring the tandem duplicator phenotype

  Study EGAS50000001078

• DAC for "Capturing disease severity in LIS1-lissencephaly reveals proteostasis dysregulation in patient-derived forebrain organoids" with Julia Ladewig(Julia.ladewig@zi-mannheim.de), Moritz Mall(m.mall@dkfz-heidelberg.de), and Matteo Gasparotto(matteo.gasparotto@zi-mannheim.de)

  Dac EGAC00001003588

• Walter and Eliza Hall - Aix-Marseille Université

  Data Access Committee for the Liao et al. 2025 study, D4Z4End2End: complete genetic and epigenetic architecture of D4Z4 macrosatellites in FSHD, BAMS and reference cohorts.

  Dac EGAC50000000655

• bulkRNAseq of ovarian cancer cell lines

  bulkRNAseq of four ovarian cancer cell lines (PA-1, A2780, A2780/CP20, TOV-21G)

  Dataset EGAD50000002059

• Chromatin accessibility in OCI-AML22 cells

  ATAC-seq performed in OCI-AML22 subpopulations sorted based on CD34 and CD38 status

  Dataset EGAD50000001631

• Division of Cancer Evolution National Cancer Center Research Institute Data Access Committee

  Data Access Committee for data from Division of Cancer Evolution, National Cancer Center Research Institute

  Dac EGAC50000000737

• MD Anderson OPMD DAC

  Datasets and agreement used for the OPMD dataset access of the publication Reconstructing oral cavity tumor evolution through brush biopsy, Springer Nature, DOI: 10.1038/s41598-024-72946-3

  Dac EGAC50000000384

• WES

  Whole Exome Sequencing data from Lauss et al Nat Comm 2024. Molecular patterns of resistance to immune checkpoint blockade in melanoma.

  Dataset EGAD50000000380

• Multiple_myeloma_precursor_genomics

  Whole genome sequencing of up to 45 multiple myeloma precursor samples and matched normals pairs.

  Study EGAS00001006312

• Juvenile Idiopathic Arthritis exome sequencing in a consanguineous family

  Identify the causative gene defect in three affected patients with JIA.

  Study EGAS00001003510

• OAC RNASeq

  Please see our related publication, 'Molecular profiling to predict immunochemotherapy outcomes in esophageal adenocarcinoma'

  Study EGAS00001006468

• BLUEPRINT Bisulfite-seq and Whole Genome Sequencing of mantle cell lymphoma

  Bisulfite-seq and Whole Genome Sequencing of mantle cell lymphoma

  Study EGAS00001001638

• Colorectal_organoids_and_tumour_tissue___Whole_Genome_X10

  Whole genome sequencing of single cell derived organoids from normal colon tissue and colorectal cancer.

  Study EGAS00001001100

• V4_Colorectal_panel_test

  Targeted gene screen of cell line tumours for testing the new V4 Colorectal gene panel.

  Study EGAS00001001807

• Mutational_signatures_and_clonal_dynamics_in_normal_human_tissues

  Somatic mutations (burdens and signatures) and clonal dynamics in normal human tissues

  Study EGAS00001002471

• SCC tumor sequencing

  In this study we have sequenced the tumor of 28 Squamous Cell Carcinoma patients.

  Study EGAS00001003988

• Clear cell sarcoma sequencing data

  This study shares DNA and RNA sequencing data from Clear cell sarcoma patients

  Study EGAS00001006072

• ADAPTeR Study: WES data from ccRCC patients

  ADAPTeR study RNAseq from multi-region samples taken pre and post nivolumab.

  Study EGAS00001005638

• Bolleboom-Gao peri-tumoral snRNA-seq glioblastoma dataset 2022/A

  Bolleboom-Gao peri-tumoral snRNA-seq glioblastoma dataset 2022/A

  Study EGAS00001006935

• Whole Genome Sequence and RNASeq Samples for Lung Cancer

  Short Read Whole Genome Sequence and RNASeq Samples for Lung Cancer

  Study EGAS00001007832

• Targeted capture ctDNA Library CRCQV42Run029-5

  Targeted capture ctDNA Library CRCQV42Run029-5 from patient PBC0002533, TNBC FFPE sample

  Dataset EGAD00001010518

• Targeted capture ctDNA Library CRCQV42Run024-16

  Targeted capture ctDNA Library CRCQV42Run024-16 from patient PBC0003641, TNBC FFPE sample

  Dataset EGAD00001010468

• scWGS PDX

  Single cell WGS (low pass) for PT1-derived PDX samples

  Dataset EGAD00001006137

• Impact of genetic variants in clinical outcome of a cohort of patients with oropharyngeal squamous cell carcinoma

  Caracterization of somatic variants in patients with OpSCC

  Dataset EGAD00001006151

• Reference epigenome OB56_N_PreA_smRNA-Seq data generated from KEP study

  A OB56_N_PreA_smRNA-Seq single end data for Preadipocytes(fat)

  Dataset EGAD00001003495

• Dataset for B-ALL scRNA-seq

  10x Genomics 5' library scRNA-seq data for 85 B-ALL patients with different subtypes

  Dataset EGAD00001011327

• RNAseq sample

  RNAseq sample used in study titled "Immune-awakening revealed by peripheral T cell dynamics after one cycle of immunotherapy".

  Dataset EGAD00001005747

• EV WGS

  WGS

  Dataset EGAD00001008973

• Reference epigenome Fat-adipocyte04 mRNA-Seq data generated from KEP study

  Fat-adipocyte04 mRNA-Seq paired end data

  Dataset EGAD00001007158

• WGS data from a GBM patient PT-MS8478

  WGS data from a GBM patient PT-MS8478

  Dataset EGAD00001008524

• Dataset of whole-exome sequencing of acute erythroid leukemia

  This dataset includes 48 bam files, including those of 24 tumors and 24 paired normal samples.

  Dataset EGAD00001005074

• UK10K_RARE_CHD REL-2013-04-20

  UK10K_RARE_CHD REL-2013-04-20

  Dataset EGAD00001000413

• UK10K_RARE_THYROID REL-2013-04-20

  UK10K_RARE_THYROID REL-2013-04-20

  Dataset EGAD00001000420

• scRNA primaries

  Single cell RNA-seq for primary samples

  Dataset EGAD00001006135

• Whole genome sequence of condrosarcoma

  Fastq files of 10 samples of condrosarcoma

  Dataset EGAD00001000873

• Reference epigenome Pancreas-Islet08 mRNA-Seq data generated from KEP study

  Pancreas-Islet08 mRNA-Seq paired end data

  Dataset EGAD00001007168

• Reference epigenome Islet-derived-iPSC01 WGBS data generated from KEP study

  Islet-derived-iPSC01 WGBS paired end data

  Dataset EGAD00001007144

• Reference epigenome Islet-derived-iPSC02 WGBS data generated from KEP study

  Islet-derived-iPSC02 WGBS paired end data

  Dataset EGAD00001007145

• Illumina HiSeq 2000

  Three files of patients 20, 23 and 25 with WGS done on Illumina HiSeq 2000. For research purpose and authorised user only.

  Dataset EGAD00001003438

• Reference epigenome Fat-adipocyte03 mRNA-Seq data generated from KEP study

  Fat-adipocyte03 mRNA-Seq paired end data

  Dataset EGAD00001007157

• Reference epigenome Fat-adipocyte05 mRNA-Seq data generated from KEP study

  Fat-adipocyte05 mRNA-Seq paired end data

  Dataset EGAD00001007159

• Reference epigenome Islet-derived-MSC04 WGBS data generated from KEP study

  Islet-derived-MSC04 WGBS paired end data

  Dataset EGAD00001007143

• WGBS data for Glioblastoma (EGAS00001003953, H016)

  Whole Genome Bisulfite data for human glioblastoma patients, EGAS00001003953. 68 human samples

  Dataset EGAD00001006546

• Cord blood sequencing data

  SmMIP libraries using cord blood DNA were generated in replicates and were sequenced on the NovaSeq SP platform (Illumina)

  Dataset EGAD00001007789

• input

  Input dataset of human islets. To be used in conjuction with Cohesin and Mediator ChIP-Seq datasets.

  Dataset EGAD00001005209

• Swedish schizophrenia control individuals

  Genomic DNA from Swedish control individuals was pooled. Then the genomic sequence of brain expressed miRNA genes was determined in the pools.

  Dataset EGAD00001001850

• Reference epigenome IPS02_N_NPC_WGBS data generated from KEP study

  A IPS02_N_NPC_WGBS paired end data for Neural progenitor cells(Nestin)

  Dataset EGAD00001003474

• Reference epigenome IPS03_N_ENeuron_WGBS data generated from KEP study

  A IPS03_N_ENeuron_WGBS paired end data for Early neuron cells(Tuj1)

  Dataset EGAD00001003475

• Reference epigenome OB57_D_PreA_mRNA-Seq data generated from KEP study

  A OB57_D_PreA_mRNA-Seq paired end data for Preadipocyte(fat)

  Dataset EGAD00001003487

• Targeted capture ctDNA Library CRCQV42Run025-8

  Targeted capture ctDNA Library CRCQV42Run025-8 from patient PBC0003385, TNBC FFPE sample

  Dataset EGAD00001010486

• Targeted capture ctDNA Library CRCQV42Run026-17

  Targeted capture ctDNA Library CRCQV42Run026-17 from patient PBC0003643, TNBC FFPE sample

  Dataset EGAD00001010490

• Reference epigenome CKD25_C_Podo_smRNA-Seq data generated from KEP study

  A CKD25_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003499

• A98269B

  Whole genome sequencing for single cells for library A98269B 1609 cells; filetype=bam

  Dataset EGAD00001006947

• HipSci - Bardet-Biedl Syndrome - RNA Sequencing - October 2016

  HipSci - Bardet-Biedl Syndrome - RNA Sequencing - October 2016

  Dataset EGAD00001003181

• Reference epigenome Islet-derived_MSC06 mRNA-Seq data generated from KEP study

  Islet-derived_MSC06 mRNA-Seq paired end data

  Dataset EGAD00001007878

• A96217B

  Whole genome sequencing for single cells for library A96217B 1616 cells; filetype=bam

  Dataset EGAD00001006945

• Reference epigenome Islet-derived-MSC01 WGBS data generated from KEP study

  Islet-derived-MSC01 WGBS paired end data

  Dataset EGAD00001007140

• Reference epigenome CKD25_C_Podo_mRNA-Seq data generated from KEP study

  A CKD25_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003483

• HipSci - Bardet-Biedl Syndrome - Exome Sequencing - July 2017

  HipSci - Bardet-Biedl Syndrome - Exome Sequencing - July 2017

  Dataset EGAD00001003515

• CTCF-ChIP-Seq of cohesin-mutated and wildtype adult AMLs

  ChIP-Seq targeting CTCF in cohesin-mutated (STAG2 or RAD21 mutations) and wildtype adult AMLs (CTRL-AMLs).

  Dataset EGAD00001011200

• RNA sequencing data to study "A biobank of patient-derived pediatric braintumor models"

  RNA sequencing data for the PDOX model EPD-613FH

  Dataset EGAD00001003573

• Targeted capture ctDNA Library CRCQV42Run022-7

  Targeted capture ctDNA Library CRCQV42Run022-7 from patient PBC0002744, TNBC FFPE sample

  Dataset EGAD00001010458

• WES HCC-neuro

  WES data of a HCC with neuroendocrine differentiation (HCC-NED), normal and organoid from a 74-year-old man.

  Dataset EGAD00001008430

• He et al. WGS data

  This dataset are the bam files of WGS data from the paper by He et al.

  Dataset EGAD00001007133

• Liquid Biopsy by NGS show differences in CRC stage

  Exome sequencing from cfDNA blood samples. 30 sets of 2x76 Illumina reads in Fastq format.

  Dataset EGAD00001004307

• ChIP-Seq files for PCGP ATRX study

  ChIP-Seq files for PCGP ATRX study paper titled "MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma"

  Dataset EGAD00001004429

• Pancreatic organoid - case samples

  This dataset contains 31 pancreatic organoid samples used in the 'organoid data of pancreatic cancers ' study

  Dataset EGAD00001004528

• Reference epigenome SMC05 h3k9me3 ChIP-Seq data generated from KEP study

  SMC05 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007336

• Whole-genome sequencing of Tibetans from China

  Twenty-seven Tibetan samples from China were whole-genome sequenced to investigate high-altitude adaptation, population genetics and demographic history.

  Dataset EGAD00001004797

• HIPO blastemal Wilms (nephroblastoma) RNA sequencing samples

  HIPO blastemal Wilms (nephroblastoma) characterisation of tumor driving gene expression events

  Dataset EGAD00001000993

• Targeted deep sequencing of somatic mutations

  We used targeted deep sequencing to accurately establish the allele frequencies of the mutations identified by exome sequencing

  Dataset EGAD00001000763

• SFHS pedigrees

  Deep (>25x mean coverage) whole genome sequencing on 5-10 families drawn from the Scottish Family Health Study with four or more children.

  Dataset EGAD00001001214

• UCL Lung PCA - Whole exome multiregion sequencing data from human preinvasive airway biopsies

  UCL Lung PCA - Whole exome multiregion sequencing data from human preinvasive airway biopsies

  Dataset EGAD00001015539

• Reference epigenome Islet-derived-MSC02 WGBS data generated from KEP study

  Islet-derived-MSC02 WGBS paired end data

  Dataset EGAD00001007141

• Single-cell RNA-seq cases

  Single-cell RNA-seq cases (Tumor and adjacent tissue)

  Dataset EGAD00001008835

• Fecal 16S HV metadata

  Metadata for fecal 16S-V4 rRNA gene sequence data from NCT02749630 healthy volunteers.

  Dataset EGAD00001008821

• sWGS of non-cancer controls

  Paired end shallow whole genome sequencing (sWGS) data of cell-free DNA from plasma from self-reporting healthy individuals (MonRec Cohort)

  Dataset EGAD00001005805

• WGS data from a GBM patient PT-SB3465

  WGS data from a GBM patient PT-SB3465

  Dataset EGAD00001008528

• McGill EMC Release 4 in tissue "Brodmann (1909) area 44"

  McGill EMC Release 4 in tissue "Brodmann (1909) area 44"

  Dataset EGAD00001001285

• Uncovering tumor intrinsic and extrinsic factors that regulate hepatocellular carcinoma growth using patient derived xenograft assays

  Exome Sequencing and RNA Sequencing Data for PDX Samples

  Dataset EGAD00001005734

• HipSci - Healthy Normals - Exome Sequencing - April 2015

  HipSci - Healthy Normals - Exome Sequencing - April 2015

  Dataset EGAD00001001437

• Reference epigenome Pancreas-Islet07 mRNA-Seq data generated from KEP study

  Pancreas-Islet07 mRNA-Seq paired end data

  Dataset EGAD00001007167

• Reference epigenome CKD24_C_Podo_mRNA-Seq data generated from KEP study

  A CKD24_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003482

• Genentech gastric tumor sequencing

  Exome-seq, RNA-Seq, SNP array profiling of gastric tumor samples.

  Dataset EGAD00001000815

• Targeted capture ctDNA Library CRCQV42Run026-14

  Targeted capture ctDNA Library CRCQV42Run026-14 from patient PBC0003587, TNBC FFPE sample

  Dataset EGAD00001010487

• Targeted capture ctDNA Library CRCQV42Run029-11

  Targeted capture ctDNA Library CRCQV42Run029-11 from patient PBC0001353, TNBC FFPE sample

  Dataset EGAD00001010511

• Finnish - THL Health2000 Dataset

  The dataset encompasses 208 Runs from the WGSPD Project 3 - Genomic Strategies to Identify High-impact Psychiatric Risk Variants Project

  Dataset EGAD00001008684

• CP-NET Cram files

  WGS Cram files from the Childhood Cerebral Palsy Integrated Neuroscience Discovery Network "CP-NET" - Clinical Database Platforms - Phase 3 project.

  Dataset EGAD00001010014

• Reference epigenome OB57_D_PreA_smRNA-Seq data generated from KEP study

  A OB57_D_PreA_smRNA-Seq single end data for Preadipocyte(fat)

  Dataset EGAD00001003496

• Targeted capture ctDNA Library CRCQV42Run026-15

  Targeted capture ctDNA Library CRCQV42Run026-15 from patient PBC0002872, TNBC FFPE sample

  Dataset EGAD00001010488

• PACA-CA RNASeq fastq files

  Fastq files for PACA-CA RNA Seq analysis, for DCC release 27

  Dataset EGAD00001003972

• STREP GENE Study Genome-wide Genotyping by Illumina Array

  Genotyping of 43 cases of invasive GAS infection by Illumina HumanCore-24 array and Illumina Global Screening Array.

  Dataset EGAD00001004558

• Reference epigenome Pancreas-Islet06 mRNA-Seq data generated from KEP study

  Pancreas-Islet06 mRNA-Seq paired end data

  Dataset EGAD00001007166

• Reference epigenome SMC01 h3k4me3 ChIP-Seq data generated from KEP study

  SMC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007311

• WGS files for paper titled "Preclinical Pediatric Molecular Analysis for Therapy Choice (MATCH)"

  WGS files for paper titled "Preclinical Pediatric Molecular Analysis for Therapy Choice (MATCH)"

  Dataset EGAD00001015697