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• APCDR AGV Zulu

  APCDR AGV Project: Array data from 100 Zulu. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001056

• APCDR AGV Banyarwanda

  APCDR AGV Project: Array data from 100 Banyarwanda. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001053

• Single-cell RNA and TCR sequencing of 40 advanced HCC biopsies.

  Single-cell RNA and TCR sequencing of 40 advanced HCC pre-treatment biopsies from 38 patients.

  Dataset EGAD00001011347

• 12 Nasopharyngeal carcinoma patients without treatment and 12 Nasopharyngeal carcinoma patients with treatment (WGS)

  12 Nasopharyngeal carcinoma patients without treatment and 12 Nasopharyngeal carcinoma patients with treatment (WGS)

  Dataset EGAD00001009840

• RNA-seq of AD, MCI and control ONS cells

  Total RNA sequencing of cultured ONS cells derived from patients with Alzheimer's disease (AD), individuals with mild cognitive impairment (MCI) and cognitively healthy controls.

  Dataset EGAD00001009395

• 2_RNAseq_fALS_Ctrl

  iPSC-derived motor neurons form familial ALS and Controls. 2 fALS iPSC lines and 3 Ctrl iPSC lines.

  Dataset EGAD00001008425

• RNA sequencing of AD, MCI and control OM cells

  Total RNA sequencing of cultured OM cells derived from patients with Alzheimer's disease (AD), individuals with mild cognitive impairment (MCI) and cognitively healthy controls.

  Dataset EGAD00001008707

• Single-cell TCR sequencing of gammadelta and CD8+ alphabeta T cells in celiac disease

  Paired single-cell sequencing dataset of T-cell receptors from both treated and untreated celiac patients. (Amplicon sequencing, paired-end fastq files).

  Dataset EGAD00001007081

• Germline DNMT3A mutation in familial acute myeloid leukemia

  Longitudinal and germline exome sequencing analysis of a mother and son pair who both developed adult-onset diploid AML identified a novel germline missense mutation DNMT3A p.P709S.

  Dataset EGAD00001006248

• Organoid Derivation Project TGS: Release 3

  Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients.

  Dataset EGAD00001005958

• Organoid Derivation Project WGS: Release 2

  Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients.

  Dataset EGAD00001005955

• Single-cell TCR sequencing of gammadelta IELs in celiac disease

  Paired single-cell sequencing dataset of T-cell receptors from IELs, from both treated and untreated celiac patients and from controls. (Amplicon sequencing, paired-end fastq files).

  Dataset EGAD00001005362

• Single cell transcriptome atlas of immune cells in human small intestine and in Celiac disease

  Single cell transcriptome atlas of immune cells in human small intestine and in Celiac disease

  Dataset EGAD00001005127

• Gastric Cancer Organoid Cultures and Tumors Whole Exome Sequencing Data

  Whole exome sequencing data generated from organoid cultures established from gastric cancers, paired gastric tumor frozen tissues and blood leukocyte DNA.

  Dataset EGAD00001004301

• RRBS sequencing of 7 tumour regions and a normal sample from a single TRACERx patient.

  RRBS sequencing of 7 tumour regions and a normal sample from a single TRACERx patient.

  Dataset EGAD00001003404

• Methylated DNA immunoprecipitation sequencing of untreated and castration resistant prostate cancer

  Methylated DNA immunoprecipitation sequencing of 28 untreated prostate cancers, 11 castration resistant prostate cancers, and 12 benign prostatic hyperplasias.

  Dataset EGAD00001000610

• Whole genome sequencing of untreated and castration resistant prostate cancers

  Low coverage whole genome sequencing of 27 untreated prostate cancers, 9 castration resistant prostate cancers, and 4 benign prostatic hyperplasias.

  Dataset EGAD00001000612

• Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma - RNA validation cohort

  This reposiroty contains bulk RNA data generated by Blood Cancer Research Group (Ostrava, Czech Republic) as a part of publication named "Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma" published in Hemapshere.

  Study EGAS50000001212

• Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma - WGS validation cohort

  This reposiroty contains bulk WGS data generated by Blood Cancer Research Group (Ostrava, Czech Republic) as a part of publication named "Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma" published in Hemapshere.

  Study EGAS50000001211

• MSI2 knockdown and inhibition in mantle cell lymphoma cell lines RNAseq data

  Fastq transcriptomic sequencing files from Z138 mantle cell lymphoma (MCL) cell line upon MSI2 knockdown (KD) with two different shRNAs and after MSI2 inhibition with Ro 08-2750 small molecule. Dataset includes 4 samples of Z138 MSI2-KD, 4 of Z138 control, 3 of Z138 treated with Ro 08-2750 and 3 of Z138 treated with DMSO.

  Dataset EGAD00001009420

• Genomic, epigenomic and transcriptomic profiling of GCTB

  This dataset contains primary raw data of whole-genome sequencing, whole-genome bisulfite sequencing, ATAC-seq, ChIP-seq (ChIP-mentation) of histone variants and modifications, as well as RNA-seq of giant cell tumor of bone tissue and primary cell line samples.

  Dataset EGAD00001005109

• Genomic Analysis of Anaplastic Thyroid Carcinoma

  This dataset includes WGS & WTS alignment data generated from 1 ATC tumor, its matched peripheral blood specimen and 3 authenticated ATC cell lines, THJ-16T, THJ-21T and THJ-29T. In addition, it includes WTS data from extra 4 unique anaplastic cell lines, ACT-1, C643, HTh7 and T238.

  Dataset EGAD00001001321

• PEVOsq WES data

  Raw paired FASTQ data of patients at baseline from the PEVOsq cohort

  Dataset EGAD50000001013

• preQC Genotypes

  preQC genotype data from the Affymetrix AxiomTM HGCoV2 1 array in plink ped/map format

  Dataset EGAD00010002437

• GLASS-NL DNA-Methylation

  DNA-methylation data of samples included in the GLASS-NL cohort

  Dataset EGAD00010002647

• EGA_PBC_phased

  A cohort of 2886 participants of the Japan PBC-GWAS Study

  Dataset EGAD00010001533

• BC WGS Dataset 4

  Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells

  Dataset EGAD00001001353

• BC WGS Dataset 3

  Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells

  Dataset EGAD00001001351

• Chemosensitive Relapse in Small Cell Lung Cancer Patient-Derived Xenografts

  Genetic and epigenetic analysis of patient-derived xenograft models of acquired chemoresistance in small cell lung cancer.

  Study phs001249

• Multi-omic profiling of patient-derived pancreatic tumor organoids

  We conducted multi-omic profiling of patient-derived pancreatic cancer organoids and genetically engineered normal pancreas organoids.

  Study JGAS000719

• ExerFiber (Single muscle fiber exercise responses)

  Individual fibers of human skeletal muscle biopsies - collected immediately post-exercise and after 3h of recovery. m. vastus lateralis

  Study EGAS50000000419

• PREDICT___Whole_Genomes

  PREDICT/Predicting individual response and resistance to VEGFR/mTOR pathway therapeutic intervention using biomarkers discovered through tumour functional genomics.

  Study EGAS00001000934

• Long-read RNA sequencing of human normal liver organoid with or without SF3B4 overexpression

  Project aims to find alternative splicing events and resulting transcript isoforms modulated by SF3B4

  Study EGAS50000000849

• MBD4 targeted sequencing

  We sequenced a gene of interest, MBD4, in both germline (n=1099) and tumor (n=192) sample from Uveal Melanoma patients.

  Study EGAS00001005012

• checup

  Sequencing data from a phase II study of nivolumab and ipilimumab in recurrent or refractory cancer of unknown primary (CheCUP trial)

  Study EGAS00001007403

• Targeted sequencing of BRCA1 and BRCA2 genes in a Moroccan breast cancer cohort

  This dataset contains fastq files sequencing with Oxford Nanopore (MK1C) and Ion Torrent S5

  Dataset EGAD50000002560

• INVADE bulk RNAseq

  Fastq files of bulk RNAseq data from DCIS, invasive and microinvasive breast cancer at diagnosis. This dataset covers 18 DCIS cases, 17 microinvasive and 20 primary invasive breast cancer.

  Dataset EGAD50000000320

• Detection of human brain cancers using genomic and immune cell characterization of cerebrospinal fluid through CSF-BAM

  Detection of human brain cancers using genomic and immune cell characterization of cerebrospinal fluid through CSF-BAM

  Dataset EGAD00001015645

• Dataset to study clonal evolution in TCF3:PBX1 patient SJE2A063 using scWGS-seq

  scWGS-seq of flow sorted blast and normal cells from SJE2A063 with 80 high quality cells sequenced (75 blast and 5 normal)

  Dataset EGAD00001011328

• Dataset to study clonal evolution in TCF3:PBX1 patient SJE2A066 using scWGS-seq

  scWGS-seq of flow sorted blast and normal cells from SJE2A066 with 69 high quality cells sequenced (62 blast and 7 normal)

  Dataset EGAD00001011329

• Dataset to study clonal evolution in TCF3:PBX1 patient SJE2A067 using scWGS-seq

  scWGS-seq of flow sorted blast and normal cells from SJE2A067 with 78 high quality cells sequenced (73 blast and 5 normal)

  Dataset EGAD00001011330

• Dataset to study clonal evolution in iAMP21 patient SJBALL030072using scWGS-seq

  scWGS-seq of flow sorted blast and normal cells from SJBALL030072with 66 high quality cells sequenced (61 blast and 5 normal)

  Dataset EGAD00001010288

• Small variants in mtDNA of Canary Islanders (ITER)

  Small variants in mtDNA of several Canary Islanders sequenced with Illumina WGS and WES and Oxford Nanopore Technologies WGS.

  Dataset EGAD00001008333

• Single-cell RNA and TCR sequencing of PBMC from patients with uveal melanoma

  Single-cell RNA and TCR sequencing of PBMC from patients with uveal melanoma.

  Dataset EGAD00001007913

• Whole exome sequencing (bam files) of 55 samples of myxofibrosarcoma and 44 matched pairs

  Whole exome sequencing data (bam files) of 55 samples of myxofibrosarcoma and 44 matched pairs.

  Dataset EGAD00001007824

• Single cell sequencing in CNS autoimmune disease

  RNA, T cell receptor and B cell receptor single cell sequencing data generated on T and B cells derived from patients with CNS autoimmune disease

  Dataset EGAD00001006232

• Single cell multiomics sequencing and analyses of human colorectal cancer

  Whole genome sequencing data of tumor tissues, adjacent normal tissues, and peripheral blood from CRC patients.

  Dataset EGAD00001004495

• Infiltrative and drug-resistant slow-cycling cells support metabolic heterogeneity in glioblastoma

  Glioblastoma patient derived Fast/Slow cycling cancer stem cell RNA sequencing. Consists of 3 patient cell lines and 6 files

  Dataset EGAD00001004380

• Exome capture sequencing of SCLC tumor/normal pairs and cell lines

  Exome capture sequencing of SCLC tumor/normal pairs and cell lines

  Dataset EGAD00001000222

• RNA sequencing of SCLC tumor/normal sample pairs and cell lines

  RNA sequencing of SCLC tumor/normal sample pairs and cell lines

  Dataset EGAD00001000223