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• Clonal Driver Neoantigen Loss under EGFR TKI and Immune Selection Pressures

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  Study EGAS00001007926

• Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls

  Study EGAS00001005069

• Methylation clocks - individual colon, small intestine and endometrial crypts

  Study EGAS00001005514

• Dataset with genome-wide array data from 64 Tunisian and 45 Moroccan individuals.

  Study EGAS00001006427

• Follicular Lymphoma Whole Genome and Transcriptome Sequencing

  Study EGAS00001006646

• WGS of KCNQ2 R201C patient derived iPSC and its isogenic line

  Study EGAS00001007231

• Genome-wide methylation detection and episignature analysis using PacBio long-read sequencing

  Study EGAS00001008250

• PTPN22 LOTx dataset

  Genotype of PTPN22 SNPs in LOTx donors and recipients

  Dataset EGAD00010001645

• PDX-OmniExpress24

  Primary and PDX SqCC samples using Infinium OmniExpress-24

  Dataset EGAD00010001228

• 20200819_EGA_Qld_Melanoma.radiomics

  A radiomics study integrating PET/CT, WES and RNAseq data

  Dataset EGAD00001006375

• EGAD00000000029

  Aggregate results from a case-control study on stroke and ischemic stroke.

  Dataset EGAD00000000029

• PacBio HiFi whole-genome sequencing of two microsatellite instability (MSI) gastric cancer

  We generated long-read whole-genome sequencing (WGS) data using PacBio HiFi from two human gastric cancer cell lines exhibiting microsatellite instability (MSI). The dataset contains aligned bam (hg38) files.

  Dataset EGAD50000002300

• Spatially resolved targetted sequencing of colorectal cancers

  Sequencing of laser-capture micro dissected colorectal tumour glands using a targeted capture panel. Tumours were previously subjected to WGS in the parent EPICC study. UMI-resolved aligned bam files, aligned to hg38.

  Dataset EGAD50000001650

• Long-read RNA-seq from 5 patients with stereotyped subset CLL

  Oxford Nanopore Technologies based long-read RNA sequencing data from 5 patients with stereotyped subset CLL. The BAM files were aligned against hg19 reference genome.

  Dataset EGAD50000000755

• HSP90 inhibitor resistant K562 cells

  K562 cell line has been treated with two different HSP90 inhibtors. After resistance clones emerged, they have been genetically characterized using WES in comparison to the parental K562 cell line.

  Dataset EGAD00001009051

• RNA-Seq of human CD4 Treg cells

  This dataset maps gene expression regulation in human primary regulatory CD4+ T cells (Tregs). It includes whole transcriptome data for141 samples. The final quality filtered set included 123 individuals with RNA-seq data.

  Dataset EGAD00001004830

• Deep Sequencing of somatic cancer mutations

  We enriched a panel of cancer associated genes using the Custom Sure Select Target Enrichment Kit. Identified mutations were validated with deep sequencing in order to assess mutated allele frequencies more accurately.

  Dataset EGAD00001001313

• Genome sequence data from a metastatic squamous cell carcinoma of the oropharynx patient

  Genome sequence data from a metastatic squamous cell carcinoma of the oropharynx patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

  Dataset EGAD00001003691

• NPC genome-wide human SNP array data

  nasopharyngeal carcinoma genome-wide human SNP array data for 4083 NPC cases and 4811 controls

  Dataset EGAD00010002296

• Department of Pathology and Tumor Biology, Kyoto University Data Access Committee

  Dac EGAC00001000150

• Genetics and transcriptomes of pediatric B cell precursor leukemia with gain of chromosome 21

  Dac EGAC00001001348

• Swarm Learning to identify COVID-19, tuberculosis and leukemia patients based on blood transcriptomes

  Dac EGAC00001001639

• Immune infiltrate and tumor microenvironment transcriptional programs stratify pediatric osteosarcoma into prognostic groups at diagnosis

  Dac EGAC00001002133

• Extreme intratumor heterogeneity and driver evolution in mismatch repair deficient gastro-esophageal cancer

  Study EGAS00001003434

• Biological and Therapeutic Implications of a Unique Subtype of NPM1 Mutated AML

  Study EGAS00001004872

• Inherited CD28 deficiency in otherwise healthy patients with disseminated warts and giant horns

  Study EGAS00001004837

• Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages

  Study EGAS00001007413

• WGS of iPSC from TOF patients with/without DG and healthy control

  Study EGAS00001006035

• Induction Failure in Childhood and Young Adult T-cell Acute Lymphoblastic Leukemia

  Study EGAS00001006411

• Parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells

  Study EGAS00001007026

• Accessibility Over Transposable Elements Reveals Genetic Determinants of Stemness Properties in Normal and Leukemic Hematopoiesis

  Study EGAS00001007191

• Sample sheet

  Linking anonymized sample IDs and anonymized patient IDs.

  Dataset EGAD00001011166

• Whole exome and whole genome sequencing of juvenile myelomonocytic leukemia (JMML)

  Dataset EGAD00001000427

• RNAseq of samples from CLL patients treated with idelalisib in vivo

  The dataset contains RNA sequencing data from 18 paired samples of 9 CLL patients treated with idelalisib in vivo (median time on therapy 4 weeks; range 2-5 weeks).

  Dataset EGAD50000000878

• Transcriptome - Uveal Melanomas

  Total RNA sequencing on 9 uveal melanomas. Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Gold (Illumina, 20020599). Paired-end libraries (2 x 100 bp) were sequenced on a NovaSeq 6000 instrument (Illumina).

  Dataset EGAD50000000763

• Human tumor bulk RNA-seq

  We profiled 7 patient neuroblastoma-FOXR2 tumor samples by bulk RNA-seq. The raw fastqs are provided.

  Dataset EGAD00001010901

• Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models: validation cohort

  Total RNA sequencing (SMARTer Stranded Total RNA-Seq Kit v2) data of extracellular RNA (exRNA) from liquid biopsies of the validation PDX/CDX cohort

  Dataset EGAD00001009413

• Department of Pathology and Tumor Biology, Kyoto University Data Access Committee

  Dac EGAC00001000352

• Mutated H3 Histones Drive Human Pre-Leukemic Hematopoietic Stem Cell Expansion And Promote Leukemic Aggressiveness.

  Dac EGAC00001001054

• Genomic stratification and liquid biopsy in a rare adrenocortical carcinoma (ACC) case, with dual lung metastases

  Dac EGAC00001001138

• Uncovering tumor intrinsic and extrinsic factors that regulate hepatocellular carcinoma growth using patient derived xenograft assays

  Dac EGAC00001001387

• Greek

  Greek Multiple Sclerosis cases and controls

  Dataset EGAD00010002115

• US

  US Multiple Sclerosis cases and controls

  Dataset EGAD00010002116

• Australia

  Australia Multiple Sclerosis cases and controls

  Dataset EGAD00010002117

• Expression profiles and genetic makeup of metastases of a cancer of unknown primary.

  Study EGAS00001004059

• Subgroup-specific gene expression profiles and mixed epistasis in chronic lymphocytic leukemia (HIPO, H005)

  Study EGAS00001006361

• Concurrent germline and somatic pathogenic BAP1 variants in a patient with metastatic bladder cancer

  Study EGAS00001004055

• HNF1A haploinsufficiency causes decreased insulin expression, dysregulation of pancreatic progenitor signature genes and affects chromatin accessibility

  Study EGAS00001006309

• Characterization of stromal tumor-infiltrating lymphocytes and genomic alterations in metastatic lobular breast cancer

  Study EGAS00001004641

• An Integrated Approach to Patient Stratification and Therapy Selection in Acute Myeloid Leukemia

  Study EGAS00001004655