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• SNParray_MOCOG

  Tumor and matched normal DNA profiling by SNP array

  Dataset EGAD00010002359

• NSAID-LIV

  1000G Phase 3 Imputed cases and controls from NSAID-induced PUD study

  Dataset EGAD00010001422

• 1506_Methylation_M.vd.Berge

  DNA methylation in bronchial biopsies of asthmatics, asthma in remission and healthy subjects

  Dataset EGAD00010001731

• Thai Cases

  252 dengue fever patients and 159 dengue shock syndrome patients

  Dataset EGAD00010001487

• OCAC OncoArray data

  Germline genotype data on 56,479 ovarian cancer cases and controls

  Dataset EGAD00010001192

• EGAD00010000474

  blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 2 (CC2)

  Dataset EGAD00010000474

• EGAD00010000476

  blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 1 (CC1)

  Dataset EGAD00010000476

• EGAD00010000478

  blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 3 (CC3)

  Dataset EGAD00010000478

• PDAC CT WEX PDX1

  Whole Exome Sequencing on PDAC PDX1 parental sample and 12 clones.

  Dataset EGAD00001004580

• H3Africa TrypanoGEN+ Phenotype

  TrypanoGEN+ phenotype data containing 183 samples from DRC, Malawi and Uganda.

  Dataset EGAD00001011348

• WES FASTQ files from three vials derived from QHJI14s04 human iPSC stock

  Whole exome sequencing libraries were made from three vials derived from QHJI14s04 human iPSC secondary cell stock, where Nimblegen SeqCap EZ library kit v3.0 was used. The libraries were sequenced with Illumina HiSeq 2500. This dataset contains 3 paired fastq files.

  Dataset EGAD50000001369

• GCP Challenges in Hepatology

  raw RNAseq data from blood plasma of patients diagnosed with liver disease. Total RNA libraries were prepared using the SMARTer Stranded Total RNA-Seq-Kit v3 - Pico Input Mammalian (Takara Bio). Libraries were paired-end sequenced (2x100) o a NovaSeq 6000 instrument using NovaSeq S2 or S1 kit (Illumina).

  Dataset EGAD50000000775

• Variants Derived From Heart Centre Biobank CHD Probands (Canada)

  Short variants identified in 731 CHD probands enrolled through the Heart Centre Biobank Registry (Canada).

  Dataset EGAD50000000838

• 10x Genomics single-cell RNA sequencing of cerebrospinal fluid

  This dataset contains fastq files from single-cell RNA sequencing of cerebrospinal fluid of 81 patients with multiple sclerosis (n=33) or other neurological disease (n=48) using the 10x Genomics Chromium single cell 3’ v2 chemistry. Sequencing was performed using an Illumina HiSeq4000 sequencer.

  Dataset EGAD50000000184

• Trynka_sceQTL_genotypes

  Blood samples were obtained from 119 healthy individuals of British ancestry. Genomic DNA was isolated from a suspension of PBMCs from each individual using a DNA isolation kit (Qiagen). Genotyping was then performed using the Infinium CoreExome-24 (v1.3) chip (Illumina).

  Dataset EGAD00010002291

• A novel subset of human CD33+ haematopoietic stem cells characterized at single-cell resolution

  This dataset comprises single-cell RNA sequencing of the human Lin-CD34+38-45RA-90+49f+ phenotype isolated from 2 normal cord donors. Library preparation was performed following a modified CEL-Seq2 protocol.

  Dataset EGAD00001003955

• WGS from PDAC samples

  Bam files from WGS of PDAC samples used in the PCSI mismatch repair study

  Dataset EGAD00001006262

• The natural history of clonal haematopoiesis: colony WGS

  Whole-genome sequencing of 288 single-cell-derived blood colonies from 3 elderly individuals with clonal haematopoiesis.

  Dataset EGAD00001007684

• HiC-sequencing in human monocyte differentiation

  This dataset consists of in situ HiC-seq data from human monocytes, monocyte-derived dendritic cells as well as monocyte-derived cells that were subjected to siRNA treatment targeting CTCF or RAD21. In total, the data set includes 42 samples.

  Dataset EGAD00001007955

• Measurable residual disease in elderly acute myeloid leukemia: results from the PETHEMA-FLUGAZA phase III clinical trial

  In our study, we hypothetyzed that CD34progenitors from cases with undetectable Minimal residual Disease (MRD) by flow cytometry would contain cells with leukemic-initiating-potential that could be identified on genetic (rather than phenotypic) grounds by Whole Exome Sequencing.

  Dataset EGAD00001006585

• Transcriptome sequencing of replication repair deficient brain cancers

  Hypermutant tumors which harbor many somatic mutations may obscure the interpretation of targetable genomic events. This dataset contains transcriptome sequencing from 21 replication repair deficient brain tumor samples as well as healthy controls.

  Dataset EGAD00001006921

• University of Helsinki and Turku University Hospital Data Access Committee

  Dac EGAC00001001760

• Multi-omics integration reveals only minor long-term molecular and functional sequelae in immune cells of individuals recovered from COVID-19

  Dac EGAC00001002267

• Whole Exome Sequencing of Spanish Patients diagnosed with rare ophtalmogenetic disorders: Macular Dystrophy, Retinitis Pigmentosa and Leber's congenital amaurosis.

  Study EGAS00001004084

• yemcha-U-1

  Yemen and Chad Genotyping

  Dataset EGAD00010001868

• 5074STDY-G-1

  Genetic Overlap between Metabolic and Psychiatric disease

  Dataset EGAD00010001484

• EGAD00010000646

  DNA methylation analysis of 35 prostate tumor and 6 normal prostate samples

  Dataset EGAD00010000646

• EGAD00010000692

  Genome-wide DNA methylation epigenotyping of African rainforest hunter-gatherers and neighbouring agriculturalists by Illumina HumanMethylation450

  Dataset EGAD00010000692

• Blood dataset - Case

  blood-based gene expression from breast cancer cases

  Dataset EGAD00010001063

• EGAD00010000560

  SNP array of 7 HCCs and matched background liver in children with bile salt export pump deficiency

  Dataset EGAD00010000560

• Mutational landscape and clonal architecture in grade-II/III gliomas

  Dataset EGAD00001001213

• Expression profiles and genetic makeup of agnospheres.

  WES performed on 15 CUP-derived samples

  Dataset EGAD00001006668

• Smoking-dependent expression alterations in nasal epithelium reveal immune impairment linked to germline variation and lung cancer risk

  Study EGAS00001006137

• Genomic and immune signatures predict clinical outcome in newly diagnosed multiple myeloma treated with immunotherapy regimens

  Study EGAS00001007404

• Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)

  Dac EGAC00001001626

• Study of renal cancers and renal cancer metastases

  Study EGAS00001001176

• Adaptive single-KIR+NKG2C+ NK cells expanded from superdonors show potent missing-self reactivity and efficiently control HLA-mismatched acute myeloid leukemia

  Study EGAS00001006614

• Preoperative ipilimumab plus nivolumab in locoregionally advanced urothelial cancer (NABUCCO Cohorts 1 and 2)

  Study EGAS00001004521

• Integrative genomic analyses of European intrahepatic cholangiocarcinoma: new ROS1 fusion gene and PBX1 as prognostic marker

  Study EGAS00001007525

• mRNA profiling of human plucked hair follicle

  mRNA profiling of human plucked hair follicle from frontal and occipital scalp

  Dataset EGAD00010001501

• EGAD00010000690

  Genome-wide SNP genotyping of African rainforest hunter-gatherers and neighbouring agriculturalists by Illumina HumanOmniExpress

  Dataset EGAD00010000690

• RHD_NC_OMNI_Controls

  Healthy volunteers and missing phenotype individuals recruited in New Caledonia with higher density genotyping

  Dataset EGAD00010000962

• Transcriptome of (monocytes and dendritic cells ), from donor S13, replicate 1 control

  Dataset EGAD00001009030

• Transcriptome of (monocytes and dendritic cells ), from donor S12, replicate 2 patient

  Dataset EGAD00001009029

• Transcriptome of (monocytes and dendritic cells ), from donor S14, replicate 1 control

  Dataset EGAD00001009032

• Transcriptome of (monocytes and dendritic cells ), from donor S14, replicate 2 control

  Dataset EGAD00001009033

• Transcriptome of (monocytes and dendritic cells ), from donor S15, replicate 1 patient

  Dataset EGAD00001009034

• Transcriptome of (monocytes and dendritic cells ), from donor S15, replicate 2 patient

  Dataset EGAD00001009035

• Transcriptome of (monocytes and dendritic cells ), from donor S16, replicate 1 patient

  Dataset EGAD00001009036

• Transcriptome of (monocytes and dendritic cells ), from donor S16, replicate 2 patient

  Dataset EGAD00001009037

• Transcriptome of (monocytes and dendritic cells ), from donor S13, replicate 2 control

  Dataset EGAD00001009031

• Transcriptome of (monocytes and dendritic cells ), from donor S12, replicate 1 patient

  Dataset EGAD00001009028

• Transcriptome of (monocytes and dendritic cells ), from donor S11, replicate 2 patient

  Dataset EGAD00001009027

• Transcriptome of (monocytes and dendritic cells ), from donor S11, replicate 1 patient

  Dataset EGAD00001009026

• Transcriptome of (monocytes and dendritic cells ), from donor S10, replicate 2 control

  Dataset EGAD00001009025

• Transcriptome of (monocytes and dendritic cells ), from donor S10, replicate 1 control

  Dataset EGAD00001009024

• Transcriptome of (monocytes and dendritic cells ), from donor S9, replicate 2 control

  Dataset EGAD00001009023

• Transcriptome of (monocytes and dendritic cells ), from donor S9, replicate 1 control

  Dataset EGAD00001009022

• Transcriptome of (monocytes and dendritic cells ), from donor S8, replicate 2 patient

  Dataset EGAD00001009021

• Transcriptome of (monocytes and dendritic cells ), from donor S8, replicate 1 patient

  Dataset EGAD00001009020

• Transcriptome of (monocytes and dendritic cells ), from donor S7, replicate 2 patient

  Dataset EGAD00001009019

• Transcriptome of (monocytes and dendritic cells ), from donor S7, replicate 1 patient

  Dataset EGAD00001009018

• Transcriptome of (monocytes and dendritic cells ), from donor S6, replicate 2 control

  Dataset EGAD00001009017

• Transcriptome of (monocytes and dendritic cells ), from donor S6, replicate 1 control

  Dataset EGAD00001009016

• Transcriptome of (monocytes and dendritic cells ), from donor S5, replicate 2 control

  Dataset EGAD00001009015

• Transcriptome of (monocytes and dendritic cells ), from donor S5, replicate 1 control

  Dataset EGAD00001009014

• Transcriptome of (monocytes and dendritic cells ), from donor S4, replicate 2 patient

  Dataset EGAD00001009013

• Transcriptome of (monocytes and dendritic cells ), from donor S4, replicate 1 patient

  Dataset EGAD00001009012

• Transcriptome of (monocytes and dendritic cells ), from donor S3, replicate 2 patient

  Dataset EGAD00001009011

• Transcriptome of (monocytes and dendritic cells ), from donor S3, replicate 1 patient

  Dataset EGAD00001009010

• Transcriptome of (monocytes and dendritic cells ), from donor S2, replicate 1 control

  Dataset EGAD00001009008

• Transcriptome of (monocytes and dendritic cells ), from donor S1, replicate 2 control

  Dataset EGAD00001009007

• Transcriptome of (monocytes and dendritic cells ), from donor S1, replicate 1 control

  Dataset EGAD00001009006

• Transcriptome of (monocytes and dendritic cells ), from donor S2, replicate 2 control

  Dataset EGAD00001009009

• Exome sequencing of nine PCC/PGL tumors

  Exome sequencing of nine PCC/PGL tumors, SF and FFPE samples

  Dataset EGAD00001001854

• Targeted Sequencing Xenturion

  Targeted sequencing of a biobank of PDOs PDXs and LMHs

  Dataset EGAD00001009653

• RNA-seq analysis of BMP-stimulated glioma initiating cells

  Bone morphogenetic protein (BMP) signaling has been shown to suppress progression of glioblastoma by promoting astrocytic differentiation; however, roles of BMP signaling in cell proliferation and apoptosis of glioblastoma cells remains to be elucidated. We here performed RNA-seq analysis of glioma initiating cells to identify transcriptional target(s) of BMP.

  Study JGAS000077

• Somatic L1 retrotransposition dynamics in high-grade serous ovarian cancer

  Somatic L1 retrotransposition was mapped in high-grade serous carcinoma (HGSC) tumors using LDI-PCR/Nanopore-seq method. This method identifies somatic L1 insertions originating from two active L1 loci at chr22q12.1 and chrXp22.2. Multiple tumors from same patient were utilised to understand L1-mediated intrapatient heterogeneity.

  Study EGAS50000001198

• Chondrosarcoma_Targeted_Sequencing_Study

  This Study uses a focused bait pull down library method to target findings of Chondrosarcoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these finding in a larger set of patients.

  Study EGAS00001000277

• Identification of causal mutation in two patients with Sotos Syndrome Features

  We performed whole exome sequencing (WES) on genomic DNA derived from two patients with Sotos Syndrome Features. Sequencing (100 base pair paired-end) was performed on an Illumina Hiseq 2000 sequencer after enrichment of 62Mb of exonic and adjacent intronic sequences with TruSeq Exome Enrichment Kit (Illumina, San Diego, CA, USA).

  Study EGAS00001000993

• Multifocal Breast Project

  Comparison of genomic rearrangements and DNA methylation patterns between different foci of multiple synchronous (multifocal and multicentric) invasive breast cancers.

  Dataset EGAD00001001041

• WGS of multi-centric liver cancers and intra-haptatic metastasis of liver cancer.

  RIKEN collection of WGS read of 59 multi-centric liver cancers or intra-haptatic metastasis and matched blood samples from 19 donors.

  Dataset EGAD00001001643

• WES of blood and patient-matched cecum tumor tissue samples, Panel NGS of patient-matched cfDNA

  WES using IDT xGen Research Exome on Illumina NovaSeq 2x150bp: Normal sample (buffy coat), cecum tumor biopsy at diagnosis, ileocecal valve region tumor sample at week 19, pericolonic metastasis at week 19, lymph node metastasis at week 19, peritoneal metastasis at week 19. Week 19 samples from hemicolectomy. Deep coverage cfDNA NGS using PanCeq pan-cancer panel on NextSeq 2x150bp: week 2 and week 10.

  Dataset EGAD00001005737

• Transcriptome sequencing of hepatocellular carcinoma biopsies (TACE study)

  Illumina-based RNA-Seq analysis of 93 liver samples. Biopsies of tumors and non-tumor tissues are included. Samples are stratified by response and non-response to TACE treatment.

  Dataset EGAD00001008158

• MSI-Exome-DAC Team Microsatellites Instability and Cancer, INSERM Hospital Saint-Antoine, Paris 12, France Carte d'identité des tumeurs, French league against cancer, Paris France

  Dac EGAC00001000665

• Early on-treatment changes in circulating tumor DNA fraction and response to enzalutamide or abiraterone in metastatic castration-resistant prostate cancer - Data Access Committee

  Dac EGAC00001003128

• High throughput profiling of undifferentiated pleomorphic sarcomas identifies two main subgroups with distinct immune contexture, clinical outcome and sensitivity to targeted therapies

  Study EGAS00001004612

• Mutation and Microsatellite Burden Predict Response to PD-1 Inhibition in Children with Germline DNA Replication Repair Deficiency: An Observational Registry Study

  Study EGAS00001005579

• DNA_Methylation_450K

  BLUEPRINT DNA methylation profiles of monocytes, neutrophils and T cells from healthy donors

  Dataset EGAD00010000850

• RNA-Sequencing generated from 180 human putamen and substantia nigra

  Dataset EGAD00001005526

• RNA-seq data from diagnosis and relapse samples of Down Syndrome acute lymphoblastic leukemia.

  Dataset EGAD00001003280

• Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets

  Dataset EGAD00001001096

• Disorders of growth and insulin action

  Illumina paired-end sequencing of whole- exome pulldown DNA from Severe Insulin Resistant patients.

  Dataset EGAD00001000381

• Osteosarcoma exome sequencing dataset

  Whole exome sequencing data of primary, secondary and tertiary tumor from a patient.

  Dataset EGAD00001002145

• ORIENT study

  scRNAseq dataset containing 5 healthy donors and 4 asthmatic donors.

  Dataset EGAD00001009687

• Comprehensive Characterization of Early Relapse and End-Stage Relapsed Refractory Multiple Myeloma (HIPO K08K/H067/H021+nonHIPO)

  Study EGAS00001007469

• 20210708_EGA_Melanoma_mk2 WGS 570 donors

  Illumina platform whole genome sequencing data for matched tumour-normal DNA samples from 570 melanoma patients

  Dataset EGAD00001008798

• MDS PacBio LRTS IsoSeq

  This dataset contains long read transcriptome sequencing of 25 myelodysplastic sndrome (MDS) patients with or without mutation in SF3B1. The BAM files are unaligned CCS reads.

  Dataset EGAD50000000077

• RNA sequencing

  RNAseq of 45 high-grade serous ovarian cancer tumour samples. Libraries were generated using the NEB Ultra II Directional RNA library Prep kit with polyA enrichment. Libraries were sequenced as paired-end 50 or 100bp on an Illumina NextSeq or NovaSeq.

  Dataset EGAD00001009844

• Baulac Lab - Paris Brain Institute

  Raw 10X single-nucleus RNA-seq data from human postoperative brain samples of patients with epilepsy and cortical malformations.

  Dac EGAC50000000546