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• Methylation data

  To ellucidate methylation activity in mRCC, methylation data was generated as part of the EuroTarget study

  Dataset EGAD50000002295

• 15x WGS HELIC MANOLIS

  15x whole genome sequencing in samples from the Cretan Greek isolate collection HELIC MANOLIS

  Dataset EGAD00001001897

• TRACERx RRBS

  TRACERx 100: RRBS data from a subset of the first 100 TRACERx tumours

  Dataset EGAD00001004798

• PacBio medulloblastoma datasets

  PacBio data from 5 medulloblastoma tumor-normal pairs. The data consists of BAM files aligned using NGMLR

  Dataset EGAD00001010852

• Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma - RNA validation cohort

  This reposiroty contains bulk RNA data generated by Blood Cancer Research Group (Ostrava, Czech Republic) as a part of publication named "Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma" published in Hemapshere.

  Study EGAS50000001212

• Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma - WGS validation cohort

  This reposiroty contains bulk WGS data generated by Blood Cancer Research Group (Ostrava, Czech Republic) as a part of publication named "Elevated circulating tumor cells reflect high proliferation and genomic complexity in multiple myeloma" published in Hemapshere.

  Study EGAS50000001211

• MPN TGS2_Follow up _ PT1_Vori_other

  Targetted capture and resequencing of 94 known myeloid genes across MPN trials (PT1 and Voriconazole study) and other MPN samples.

  Dataset EGAD00001001236

• Genomic Analysis of Anaplastic Thyroid Carcinoma

  This dataset includes WGS & WTS alignment data generated from 1 ATC tumor, its matched peripheral blood specimen and 3 authenticated ATC cell lines, THJ-16T, THJ-21T and THJ-29T. In addition, it includes WTS data from extra 4 unique anaplastic cell lines, ACT-1, C643, HTh7 and T238.

  Dataset EGAD00001001321

• Genomic, epigenomic and transcriptomic profiling of GCTB

  This dataset contains primary raw data of whole-genome sequencing, whole-genome bisulfite sequencing, ATAC-seq, ChIP-seq (ChIP-mentation) of histone variants and modifications, as well as RNA-seq of giant cell tumor of bone tissue and primary cell line samples.

  Dataset EGAD00001005109

• MSI2 knockdown and inhibition in mantle cell lymphoma cell lines RNAseq data

  Fastq transcriptomic sequencing files from Z138 mantle cell lymphoma (MCL) cell line upon MSI2 knockdown (KD) with two different shRNAs and after MSI2 inhibition with Ro 08-2750 small molecule. Dataset includes 4 samples of Z138 MSI2-KD, 4 of Z138 control, 3 of Z138 treated with Ro 08-2750 and 3 of Z138 treated with DMSO.

  Dataset EGAD00001009420

• Genome-wide 5-mC profiling in plasma of metastatic ALK-rearranged non-small cell lung cancer (NSCLC) patients receiving tyrosine kinase inhibitor therapy.

  Longitudinal plasma samples (n = 79) of 21 ALK-positive NSCLC patients and 13 healthy donors were collected alongside 15 ALK-positive tumor tissue and 10 healthy lung tissue specimens. All plasma and tissue samples were analyzed by cell-free DNA methylation immunoprecipitation sequencing to generate genome-wide 5-mC profiles. Paired cfMeDIP on NextSeq 550 using KAPA Hyper Prep Kit was done.

  Dataset EGAD00001009412

• Homozygous IL37 mutation leads to infantile inflammatory bowel disease

  Whole-exome sequencing of a trio (parents and offspring) reveals IL37 mutation leads to infantile IBD.

  Study phs002040

• Whole genome sequencing analysis of colorectal cancers

  Whole genome sequencing analysis of colorectal cancers with MSI or MSS and their immuno-genomic features

  Study JGAS000157

• CARE iSGS single nucleus RNA-seq

  This study contains single nucleus RNA-sequencing data from healthy controls, iSGS, and traumatic subglottic stenosis patients.

  Study EGAS50000000878

• p200503_fn2

  RNA-Sequencing data of Fusobacterium nucleatum (Fna 71) treated CRC patient derived (CAF180, CAF181) and CAF05 cancer associated fibroblasts (CAFs).

  Study EGAS50000001121

• Short-read mRNA sequencing of human normal liver organoid with or without SF3B4 overexpression

  Project aims to find alternative splicing events and resulting transcript isoforms modulated by SF3B4

  Study EGAS50000000851

• IGV gene profiling of IGH+ and IGHUND HGBCL-DH-BCL2(-BCL6),revealed by NGS of 5'RACE PCR products

  NGS of 5'RACE IGKV/IGLV PCR-products from IGH+ and IGHUND HGBCL-DH-BCL2(-BCL6) lymphomas

  Dataset EGAD50000001526

• Human skin cancer (BCC, SCC, melanoma) and healthy control skin

  Smart-seq2 single cell RNA sequencing of human BCC, SCC, melanoma (ALM) and healthy control skin samples.

  Dataset EGAD50000000540

• H3K27ac CUT&Tag in LCLs derived from constitutional MLH1 epimutation carriers and non-carrier relatives

  H3K27ac CUT&Tag performed in LCLs derived from constitutional MLH1 epimutation carriers and non-carrier relatives

  Dataset EGAD50000000711

• APCDR AGV Zulu

  APCDR AGV Project: Array data from 100 Zulu. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001056

• APCDR AGV Banyarwanda

  APCDR AGV Project: Array data from 100 Banyarwanda. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001053

• Methylated DNA immunoprecipitation sequencing of untreated and castration resistant prostate cancer

  Methylated DNA immunoprecipitation sequencing of 28 untreated prostate cancers, 11 castration resistant prostate cancers, and 12 benign prostatic hyperplasias.

  Dataset EGAD00001000610

• Colorectal_organoids_and_tumour_tissue

  Whole genome sequencing of single cell derived organoids from normal colon tissue and colorectal cancer.

  Study EGAS00001000881

• RRBS sequencing of 7 tumour regions and a normal sample from a single TRACERx patient.

  RRBS sequencing of 7 tumour regions and a normal sample from a single TRACERx patient.

  Dataset EGAD00001003404

• Gastric Cancer Organoid Cultures and Tumors Whole Exome Sequencing Data

  Whole exome sequencing data generated from organoid cultures established from gastric cancers, paired gastric tumor frozen tissues and blood leukocyte DNA.

  Dataset EGAD00001004301

• early onset lone atrial fibrillation case-control study

  Target sequencing W/ TruSight Cardio Sequencing Kit. 395 early onset lone AF cases and 375 controls. Sequencing was performed on Illumina NextSeq and HiSeq 2500 systems.

  Dataset EGAD00001004330

• Colorectal organoids and tumoroids - pulldown

  Targeted capture of cancer gene panel bait set in single cell derived organoids from colon tissue and colorectal cancer from 1 patient.

  Dataset EGAD00001001208

• Whole genome sequencing of untreated and castration resistant prostate cancers

  Low coverage whole genome sequencing of 27 untreated prostate cancers, 9 castration resistant prostate cancers, and 4 benign prostatic hyperplasias.

  Dataset EGAD00001000612

• Single-cell TCR sequencing of gammadelta IELs in celiac disease

  Paired single-cell sequencing dataset of T-cell receptors from IELs, from both treated and untreated celiac patients and from controls. (Amplicon sequencing, paired-end fastq files).

  Dataset EGAD00001005362

• Single cell transcriptome atlas of immune cells in human small intestine and in Celiac disease

  Single cell transcriptome atlas of immune cells in human small intestine and in Celiac disease

  Dataset EGAD00001005127

• Germline DNMT3A mutation in familial acute myeloid leukemia

  Longitudinal and germline exome sequencing analysis of a mother and son pair who both developed adult-onset diploid AML identified a novel germline missense mutation DNMT3A p.P709S.

  Dataset EGAD00001006248

• Single-cell TCR sequencing of gammadelta and CD8+ alphabeta T cells in celiac disease

  Paired single-cell sequencing dataset of T-cell receptors from both treated and untreated celiac patients. (Amplicon sequencing, paired-end fastq files).

  Dataset EGAD00001007081

• 2_RNAseq_fALS_Ctrl

  iPSC-derived motor neurons form familial ALS and Controls. 2 fALS iPSC lines and 3 Ctrl iPSC lines.

  Dataset EGAD00001008425

• RNA sequencing of AD, MCI and control OM cells

  Total RNA sequencing of cultured OM cells derived from patients with Alzheimer's disease (AD), individuals with mild cognitive impairment (MCI) and cognitively healthy controls.

  Dataset EGAD00001008707

• RNA-seq of AD, MCI and control ONS cells

  Total RNA sequencing of cultured ONS cells derived from patients with Alzheimer's disease (AD), individuals with mild cognitive impairment (MCI) and cognitively healthy controls.

  Dataset EGAD00001009395

• 12 Nasopharyngeal carcinoma patients without treatment and 12 Nasopharyngeal carcinoma patients with treatment (WGS)

  12 Nasopharyngeal carcinoma patients without treatment and 12 Nasopharyngeal carcinoma patients with treatment (WGS)

  Dataset EGAD00001009840

• Single-cell RNA and TCR sequencing of 40 advanced HCC biopsies.

  Single-cell RNA and TCR sequencing of 40 advanced HCC pre-treatment biopsies from 38 patients.

  Dataset EGAD00001011347

• Single cell whole genome sequencing of meningiomas

  We sequenced PTA-amplified single cells from meningiomas, the most common primary intracranial tumor, to an average depth of 0.5X.

  Dac EGAC50000000512

• Study1_PeaFiber

  SOMAscan plasma proteome datasets generated from participants consuming the pea fibre snack prototype (study 1)

  Dataset EGAD00010002133

• Study2_FiberBlend

  SOMAscan plasma proteome datasets generated from participants consuming the fiber blend snack prototype (study 2)

  Dataset EGAD00010002132

• AI_NF1glioma_RNAseq

  The dataset includes 29 tumor samples from NF1-glioma patients profiled by RNA sequencing.

  Dataset EGAD00001004376

• Whole Exome Sequencing of INTERVAL

  Whole exome sequencing of a subset of participants from the INTERVAL study.

  Dataset EGAD00001002221

• Raw count table

  Raw count matrix of the 124 bulk tumor RNAseq samples from patients with hormone sensitive or castration resistant prostate cancer.

  Dataset EGAD00001008762

• TREM2+ Cells in Human Basal Cell Carcinomas

  To explore the tumor immune microenvironment heterogeneity in sporadic human basal cell carcinoma tumors, we profiled two individual patient tumors by scRNA-Seq. We identified a population of TREM2+ macrophages, which have been implicated in promoting an immunosuppressive tumor microenvironment. We identify that TREM2+ can promote tumor epithelial proliferation in an immunosuppressive independent manner.

  Study phs003242

• NABUCCO cohort 1 (NCT03387761) - Neo-Adjuvant Bladder Urothelial Carcinoma COmbination-immunotherapy

  NABUCCO cohort 1 sequencing data. The dataset includes: * Whole exome DNAseq pre-treatment on tumor samples (n=24) matched with blood samples (n=24) * RNAseq pre-treatment on tumor samples (n=18) * RNAseq post-treatment on tumor samples (n=18). Not all pre-treatment samples are linked with pre-treatment samples * High coverage Whole exome DNAseq on pre-treatment tumor samples (n=3) matched with post-treatment metastasized lymph nodes isolated with laser microdissection (n=3) * All samples are labelled with the response phenotype (Complete Responder or Non-Complete Responder)

  Dataset EGAD00001006250

• Exome sequencing samples from the Acute Care Flagship.

  Exome sequencing samples from the Acute Care Flagship, Illumina sequencing.

  Dataset EGAD00001008105

• Multiregion exome sequencing of ovarian immature teratomas

  Clinicopathologic features of the ten patients with ovarian immature teratomas studied by whole-exome sequencing

  Dataset EGAD50000000421

• PDAC Proteomics After Neoadjuvant Therapy

  Shotgun Proteomics, Proteomic characterization of the residual PDAC tumor mass after neoadjuvant chemo or combined chemo-radiation therapy

  Dataset EGAD00010002388

• Human samples from Southern Chile

  Individuals of Native American ancestry from Southern Chile genotyped with the Human Origins SNP Chip

  Dataset EGAD00010002499

• RiMod Methylation frontal

  Illumina EPIC methylation array of frontal lobe tissue from post-mortem human brains of the RiMod-FTD project

  Dataset EGAD00010002055