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• yemen

  Genotype data from Chad, Lebanon, and Yemen

  Dataset EGAD00010001101

• wtcccan-exome

  WTCCC3 Anorexia Nervosa Infinium-HumanCoreExome

  Dataset EGAD00010001043

• RNA-seq bulk

  This dataset gather all RNA-sequencing data in MM.1S cell line in control and Dex condition; both in 3 biological replicates

  Dataset EGAD00001011137

• WES_WGS_RNAseq

  This dataset includes WES, WGS, and RNAseq data generated from autopsy samples.

  Dataset EGAD00001009499

• Reliable detection of somatic mutations in single DNA molecules

  This dataset contains 160 single-cell derived blood colonies from two neonates and 6 adults. It also contains 18 samples that were used as matched normals to call mutations in NanoSeq data (dataset EGAD00001006459).

  Dataset EGAD00001006595

• Whole genome sequencing delineates regulatory and other genic variants in early onset cardiomyopathy

  Whole genome sequencing of 209 pediatric probands with primary cardiomyopathy and their family members. All samples were sequenced using Illumina short read platform.

  Dataset EGAD00001008477

• WGS and RNA-Seq data from a GBM patient PT-JB1730

  WGS and RNA-Seq data from a GBM patient PT-JB1730

  Dataset EGAD00001004245

• WGS and RNA-Seq data from a GBM patient PT-HN6692

  WGS and RNA-Seq data from a GBM patient PT-HN6692

  Dataset EGAD00001004242

• WGS and RNA-Seq data from a GBM patient PT-GR2309

  WGS and RNA-Seq data from a GBM patient PT-GR2309

  Dataset EGAD00001004241

• WGS and RNA-Seq data from a GBM patient PT-GJ3716

  WGS and RNA-Seq data from a GBM patient PT-GJ3716

  Dataset EGAD00001004240

• WGS and RNA-Seq data from a GBM patient PT-GC1519

  WGS and RNA-Seq data from a GBM patient PT-GC1519

  Dataset EGAD00001004239

• WGS and RNA-Seq data from a GBM patient PT-GB9483

  WGS and RNA-Seq data from a GBM patient PT-GB9483

  Dataset EGAD00001004238

• WGS and RNA-Seq data from a GBM patient PT-GB9186

  WGS and RNA-Seq data from a GBM patient PT-GB9186

  Dataset EGAD00001004237

• WGS and RNA-Seq data from a GBM patient PT-FB6711

  WGS and RNA-Seq data from a GBM patient PT-FB6711

  Dataset EGAD00001004235

• WGS and RNA-Seq data from a GBM patient PT-EV3071

  WGS and RNA-Seq data from a GBM patient PT-EV3071

  Dataset EGAD00001004234

• WGS and RNA-Seq data from a GBM patient PT-DS9789

  WGS and RNA-Seq data from a GBM patient PT-DS9789

  Dataset EGAD00001004233

• WGS and RNA-Seq data from a GBM patient PT-DF5919

  WGS and RNA-Seq data from a GBM patient PT-DF5919

  Dataset EGAD00001004232

• WGS and RNA-Seq data from a GBM patient PT-CM1209

  WGS and RNA-Seq data from a GBM patient PT-CM1209

  Dataset EGAD00001004231

• WGS and RNA-Seq data from a GBM patient PT-CA2271

  WGS and RNA-Seq data from a GBM patient PT-CA2271

  Dataset EGAD00001004230

• WGS and RNA-Seq data from a GBM patient PT-BM772

  WGS and RNA-Seq data from a GBM patient PT-BM772

  Dataset EGAD00001004229

• WGS and RNA-Seq data from a GBM patient PT-BK0248

  WGS and RNA-Seq data from a GBM patient PT-BK0248

  Dataset EGAD00001004228

• WGS and RNA-Seq data from a GBM patient PT-AR5365

  WGS and RNA-Seq data from a GBM patient PT-AR5365

  Dataset EGAD00001004227

• WGS and RNA-Seq data from a GBM patient PT-AL4257

  WGS and RNA-Seq data from a GBM patient PT-AL4257

  Dataset EGAD00001004225

• WGS and RNA-Seq data from a GBM patient PT-AK7565

  WGS and RNA-Seq data from a GBM patient PT-AK7565

  Dataset EGAD00001004224

• WGS and RNA-Seq data from a GBM patient PT-AH1410

  WGS and RNA-Seq data from a GBM patient PT-AH1410

  Dataset EGAD00001004223

• WGS and RNA-Seq data from a GBM patient PT-HO0394

  WGS and RNA-Seq data from a GBM patient PT-HO0394

  Dataset EGAD00001004243

• WGS and RNA-Seq data from a GBM patient PT-AB6372

  WGS and RNA-Seq data from a GBM patient PT-AB6372

  Dataset EGAD00001004222

• WGS and RNA-Seq data from a GBM patient PT-JE6375

  WGS and RNA-Seq data from a GBM patient PT-JE6375

  Dataset EGAD00001004246

• WGS and RNA-Seq data from a GBM patient PT-JP2405

  WGS and RNA-Seq data from a GBM patient PT-JP2405

  Dataset EGAD00001004247

• WGS and RNA-Seq data from a GBM patient PT-JW6420

  WGS and RNA-Seq data from a GBM patient PT-JW6420

  Dataset EGAD00001004248

• WGS and RNA-Seq data from a GBM patient PT-KM5291

  WGS and RNA-Seq data from a GBM patient PT-KM5291

  Dataset EGAD00001004249

• WGS and RNA-Seq data from a GBM patient PT-AB0029

  WGS and RNA-Seq data from a GBM patient PT-AB0029

  Dataset EGAD00001004221

• egyptgp-G-1

  Illumina Omni 2.5M SNPchip data (build37) of Egyptian samples from the Pagani et al. 2015 AJHG paper (doi: http://dx.doi.org/10.1016/j. ajhg.2015.04.019)

  Dataset EGAD00010001223

• Feasibility of targeted capture sequencing in FFPE cancer specimens 2

  Testing the feasibility of genome-scale sequencing in routinely collected formalin-fixed paraffin-embedded (FFPE) cancer specimens versus matched fresh-frozen samples using targeted pulldown capture prior to Illumina sequencing.

  Dataset EGAD00001001448

• Feasibility of targeted capture sequencing in routinely collected FFPE cancer specimens

  Testing the feasibility of genome-scale sequencing in routinely collected formalin-fixed paraffin-embedded (FFPE) cancer specimens versus matched fresh-frozen samples using targeted pulldown capture prior to Illumina sequencing.

  Dataset EGAD00001000354

• Rare germline variants in patients with personal and family history of colorectal cancer

  A double primary colorectal cancer (CRC) in a familial setting signals a high risk of CRC. In order to find novel high/moderate penetrance CRC susceptibility genes, we performed whole-exome sequencing on germline blood samples of seven familial cases from Poland with a double primary CRC.

  Study EGAS50000000606

• Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses

  Genomic characterization of pediatric patients with acute myeloid leukemia (AML) has revealed age specific mutational spectrums, distinguishing it biologically from adult patients. While gene expression profiling signatures can differentiate subsets of pediatric AML, its clinical utility in risk stratification has remained limited.

  Study EGAS00001004701

• Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA dataset

  Whole-exome sequencing of tumour regions and deep targeted sequencing of plasma samples.

  Dataset EGAD00001010031

• Epithelioid sarcoma dataset

  This deposit consists of DNA and RNA sequencing data from 32 EPS patients. 28 samples had tumor DNA sequencing data. 2 had matched normal sequencing data. 27 samples had tumor RNA sequencing data.

  Dataset EGAD00001008515

• VFF RNA-Seq data

  RNA-Seq data from vocal fold fibroblasts from controls and patients with Reinke’s edema

  Dataset EGAD00001007079

• Gastric and Esophageal tumour rearrangement screen

  Gastric and Esophageal tumour rearrangement screen

  Dataset EGAD00001000075

• Gut microbiota of the Pinggu cohort

  Shotgun metagenomic sequencing data of a total 2,338 fecal DNA samples from adults of the Pinggu cohort.

  Dataset EGAD00001007064

• Spatial tumor microenvironment characterization and outcome of relapsed/refractory classic Hodgkin lymphoma

  About half of relapsed or refractory classic Hodgkin lymphoma (r/r CHL) patients succumb to their disease after high dose chemotherapy followed by autologous stem cell transplantation (HDT/ASCT). Here, we aimed at describing spatially resolved tumor microenvironment (TME) ecosystems to establish novel biomarkers associated with treatment failure in r/r CHL.

  Study EGAS00001007261

• egpg-G-1

  Illumina Omni 2.5M SNPchip data (build37) of Ethiopian samples from the Pagani et al. 2015 AJHG paper (doi: http://dx.doi.org/10.1016/j. ajhg.2015.04.019)

  Dataset EGAD00010001221

• EGAD00010000632

  WTCCC2 People of the British Isles (POBI) samples using Illumina 1.2M array

  Dataset EGAD00010000632

• EGAD00010000634

  WTCCC2 People of the British Isles (POBI) samples using Affymetrix 6.0 array

  Dataset EGAD00010000634

• EGAD00010000740

  Osteoarthritis cases genotyped on Illumina HumanOmniExpress from the arcOGEN Consortium (http://www.arcogen.org.uk/) with broader consent.

  Dataset EGAD00010000740

• EGAD00010000742

  Subset 1 of osteoarthritis cases genotyped on Illumina610k from the arcOGEN Consortium (http://www.arcogen.org.uk/) with broader consent.

  Dataset EGAD00010000742

• RNA sequencing of 499 Greenlanders

  The data contain whole transcriptome sequencing of 499 Greenlanders.

  Dataset EGAD00001007717

• WGS and WES data of invasive micropapillary carcinoma of breast

  This study contains whole genome sequencing data and whole exon sequencing data of IMPC tumor and normal tissue sample.

  Dataset EGAD00001008450

• Chugai colorectal organoid sequencing

  Genomic and transcriptomic characterization of drug-resistant colon cancer stem cell lines.

  Dataset EGAD00001001446

• Whole genome sequencing of RIKEN liver cancers

  RIKEN collection of WGS reads of 530 liver cancer and matched blood samples from 260 donors.

  Dataset EGAD00001001642

• Whole genome and Whole exome sequencing of patient-derived xenograft models of endometrial cancer

  Whole genome and Whole exome sequencing of patient-derived xenograft models of endometrial cancer

  Dataset EGAD00001008326

• Genomics of Colorectal Cancer Metastases - Massively Parallel Sequencing of Matched Primary and Metastatic tumours to Identify a Metastatic Signature of Somatic Mutations (MOSAIC)

  Genomics of Colorectal Cancer Metastases - Massively Parallel Sequencing of Matched Primary and Metastatic tumours to Identify a Metastatic Signature of Somatic Mutations (MOSAIC)

  Dataset EGAD00001000080

• RNAseq from blood CD34+ cells

  This dataset contains paired-end RNA sequencing data of blood CD34+ cells from random blood donors (155 paired-end FastQ files). The data were used to perform expression quantitative trait locus (eQTL) analysis.

  Dataset EGAD00001008194

• Complex structural variation patterns in pediatric solid tumors WGS

  Paired tumor-normal whole genome sequencing data from primary tumors of patients diagnosed with neuroblastoma, Ewing sarcoma, Wilms tumor, hepatoblastoma and rhabdomyosarcoma

  Dataset EGAD00001011378

• G-SAM: Transcriptional Evolution of Glioblastomas Treated With Standard of Care

  Collection of mostly matching primary and recurrent glioblastoma RNA-seq sample pairs, also matching with an earlier DNA sequencing study

  Dataset EGAD00001007860

• Genomics characterization of BRAF-V600E colorectal cancer patients treated with anti-BRAF/EGFR

  WES files (fastQ) from 19 germline DNA, 22 tumor DNA, 5 patient-derived xenograft (PDX) DNA, and 9 plasma cfDNA) samples from 28 CRC-BRAF-mutated patients collected at baseline to anti-BRAF/EGFR therapies.

  Dataset EGAD00001008755

• EBV-AID project

  Whole genome sequencing of EBV-transformed B cells in order to determine whether EBV induction of activation-induced cytidine deaminase (AID) produces genome-wide mutations and/or chromosomal rearrangements.

  Dataset EGAD00001001458

• Lung Multi-site Targeted Sequence Capture

  DNA extracted from multiple biopsies taken from different areas of primary lung tumours will be subjected to targeted re-sequencing and analysed in order to assess intra-tumour heterogeneity with respect to mutations in a selection of cancer related genes.

  Dataset EGAD00001001017

• Dataset RNAseq from regions of insitu and invasive human mammary ductal disease

  BAM files from RNAseq study from regions of insitu and invasive human mammary ductal disease

  Dataset EGAD00001008586

• arcOGEN_HumanCoreExome-24v1-0_subset_1

  Subset 1 of osteoarthritis cases from the arcOGEN Consortium (http://www.arcogen.org.uk/) genotyped on HumanCoreExome-24v1-0 with broader consent.

  Dataset EGAD00010000922

• arcOGEN_HumanCoreExome-12v1-1_subset_1

  Subset 1 of osteoarthritis cases from the arcOGEN Consortium (http://www.arcogen.org.uk/) genotyped on HumanCoreExome-12v1-1 with broader consent.

  Dataset EGAD00010000926

• arcOGEN_HumanCoreExome-12v1-0_subset_1

  Subset 1 of osteoarthritis cases from the arcOGEN Consortium (http://www.arcogen.org.uk/) genotyped on HumanCoreExome-12v1-0 with broader consent.

  Dataset EGAD00010000925

• scRNAseq of ARID1B+/+ (control) and ARID1B+/- human telencephalic organoids at D120

  This dataset contains scRNAseq data of human telencephalic organoids, at day 120, from 4 different sequencing runs (libraries), as follows (please see cell line clone nomenclature in original publication): 1. Library 177136: Pat.2 ARID1B+/+ clone 2c (2 organoids, E11rep_1, E11rep_2), Pat.2 ARID1B+/- clone 2a (2 organoids: B002orig_1, B002orig_2) 2. Library 178119: Pat.2 ARID1B+/+ clone 2c (3 organoids: E11rep_1, E11rep_2, E11rep_3), Pat.2 ARID1B+/- clone 2a (3 organoids: B002orig_1, B002orig_2, B002orig_3) 3. Library 178120: Pat.2 ARID1B+/+ clone 2d (3 organoids: A3rep_1, A3rep_2, A3rep_3), Pat.2 ARID1B+/- clone 2b (3 organoids: B002_F7_1, B002_F7_2, B002_F7_3) 4. Library 184337: Pat.1 ARID1B+/- clone 1a (3 organoids: B001orig_1, B001orig_2, B001orig_3), HD.1 ARID1B+/+ clone 3a (3 organoids: 176_1, 176_2, 176_3), HD.1 ARID1B+/- clone 3b (3 organoids: F10_1, F10_2, F10_3)

  Dataset EGAD50000000498

• prcmd-G-1

  Genetic studies of pregnancy-related cardiometabolic disorders in Central Asian, Northern European, and Colombian populations

  Dataset EGAD00010001212

• Whole genome sequencing data of high-grade serous ovarian cancer samples (set 6)

  Whole genome sequencing data of 31 high-grade serous carcinoma (HGSC) patients (101 samples) sequenced with HiSeq X Ten and BGISEQ-500

  Dataset EGAD00001010202

• Chondrosarcoma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Chondrosarcoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000265

• Osteosarcoma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Osteosarcoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000266

• Chordoma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Chordoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000267

• Meningioma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Meningioma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000273

• The 5-hydroxymethylcytosine Landscape of Prostate Cancer

  This dataset consists of genome-wide 5hmC methylomes at various stages of prostate cancer, including not only 93 metastases from castration-resistant prostate cancer (mCRPC) patients, but also 5hmC patterns in cell-free DNA (cfDNA). There are 2000 runs in total as fastq files.

  Dataset EGAD00001008462

• WES data

  WES FASTq files of 76 bulk pre-treatment tumors and 76 matched peripheral blood mononuclear cells from GO30140 group A

  Dataset EGAD00001008129

• UK10K_COHORT_ALSPAC REL-2012-06-02

  UK10K_COHORT_ALSPAC REL-2012-06-02: Low-coverage whole genome sequencing; variant calling, genotype calling and phasing

  Dataset EGAD00001000740

• chr6_allsamples_imputated

  Chromosome 6 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002539

• chr11_allsamples_imputated

  Chromosome 11 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002538

• chr20_allsamples_imputated

  Chromosome 20 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002537

• chr5_allsamples_imputated

  Chromosome 5 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002536

• chr16_allsamples_imputated

  Chromosome 16 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002534

• chr15_allsamples_imputated

  Chromosome 15 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002533

• chr21_allsamples_imputated

  Chromosome 21 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002532

• chr13_allsamples_imputated

  Chromosome 13 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002531

• chr10_allsamples_imputated

  Chromosome 10 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002530

• chr4_allsamples_imputated

  Chromosome 4 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002529

• chr7_allsamples_imputated

  Chromosome 7 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002528

• chr14_allsamples_imputated

  Chromosome 14 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002527

• chr17_allsamples_imputated

  Chromosome 17 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002526

• chr1_allsamples_imputated

  Chromosome 1 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002525

• chr19_allsamples_imputated

  Chromosome 19 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002524

• chrX_allsamples_imputated

  Chromosome X imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002522

• chr3_allsamples_imputated

  Chromosome 3 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002521

• chr18_allsamples_imputated

  Chromosome 18 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002520

• chr8_allsamples_imputated

  Chromosome 8 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002519

• chr22_allsamples_imputated

  Chromosome 22 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002518

• chr9_allsamples_imputated

  Chromosome 9 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002535

• chr12_allsamples_imputated

  Chromosome 12 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002517

• chr2_allsamples_imputated

  Chromosome 2 imputed genotypes of samples genotyped on the Axiom Human Genotyping SARS-CoV-2 array (GRCh38)

  Dataset EGAD00010002523

• Transcriptome sequence data from a metastatic breast cancer patient

  Transcriptome sequence data from a metastatic breast cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

  Dataset EGAD00001003690

• Solve-RD_ITHACA_cohort-1_DF1+2_V1

  Solve-RD data submitted to the ERN-ITHACA cohort for re-analysis (Data freeze 1+2) v1

  Dataset EGAD00001009770

• EGAD00010000288

  All cases and Finnish, Dutch, Italian control samples (Hap550)

  Dataset EGAD00010000288