22938 results for "ega"

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• HipSci - Retinitis Pigmentosa - Exome Sequencing - July 2017

  HipSci - Retinitis Pigmentosa - Exome Sequencing - July 2017

  Dataset EGAD00001003527

• UK10K_NEURO_ASD_GALLAGHER REL-2013-04-20

  UK10K_NEURO_ASD_GALLAGHER REL-2013-04-20

  Dataset EGAD00001000436

• UK10K_NEURO_UKSCZ REL-2013-04-20

  UK10K_NEURO_UKSCZ REL-2013-04-20

  Dataset EGAD00001000430

• HipSci - Macular Dystrophy - Exome Sequencing - July 2017

  HipSci - Macular Dystrophy - Exome Sequencing - July 2017

  Dataset EGAD00001003525

• Exome sequencing from Tetralogy of fallot patients

  829 bam files from exome sequencing of human tetralogy of fallot patients

  Dataset EGAD00001004469

• Exome sequence data from DNMT3A microcephalic dwarfism patients.

  Exome sequence data from microcephalic dwarfism patients with de novo DNMT3A variants

  Dataset EGAD00001004470

• RNA sequence of HUB_5 cell culture

  RNA sequence data for conditionally reprogrammed cells from patient HUB_5

  Dataset EGAD00001001923

• UK10K_NEURO_IOP_COLLIER REL-2013-04-20

  UK10K_NEURO_IOP_COLLIER REL-2013-04-20

  Dataset EGAD00001000442

• Poly A transcriptom sequencing of mutifocal hepatocellular carcinoma

  Poly A transcriptome sequence of mutifocal hepatocelular carcinoma

  Dataset EGAD00001003231

• Exome data for an Australian Aboriginal population

  Genotype and exome data for an Australian Aboriginal population: a reference panel for health-based research.

  Dataset EGAD00001001661

• Myeloma Targeted Follow-up Study

  Targeted sequencing follow-up of genomic lesions in multiple myeloma.

  Dataset EGAD00001001215

• RNA-seq from normal human tissues

  RNA-seq from normal human tissues (2 x 250 bp)

  Dataset EGAD00001001922

• Heterogeneous Genomic Evolution and Immune Microenvironments in Metastatic Lung Cancer

  WES data of paired primary and metastatic tumors

  Dataset EGAD00001006213

• HIPO blastemal Wilms (nephroblastoma) exome sequencing samples

  HIPO blastemal Wilms (nephroblastoma) characterisation of tumor driving DNA alterations

  Dataset EGAD00001000995

• Osteosarcoma sequencing data

  This study shares DNA and RNA sequencing data from embryonal rhadbomyosarcoma patients

  Study EGAS00001005600

• Brain_Disease_Wellcome_Leap_Delta_Tissue_DNA

  Investigating how the tumour microenvironment regulates glioblastoma cell states using genomic analysis.

  Study EGAS00001005799

• A non-canonical lymphoblast in refractory childhood T-cell leukaemia

  This dataset contains 75 WGS samples of T-ALL (including matched remission samples where available).

  Dataset EGAD00001015727

• Neuroblastoma sequencing data

  This study shares tumor and normal DNA for a patient with neuroblastoma

  Study EGAS00001005602

• Somatic_mutation_in_edited_cholangiocyte_organoids_NanoSeq

  Characterisation of mutation rates and patterns in edited human cholangiocyte organoids (NanoSeq)

  Study EGAS00001006405

• Somatic_mutation_in_edited_cholangiocyte_organoids__Targeted_NanoSeq_

  Characterisation of mutation rates and patterns in edited human cholangiocyte organoids (Targeted NanoSeq)

  Study EGAS00001007266

• Raw count table

  Raw count matrix of the 124 bulk tumor RNAseq samples from patients with hormone sensitive or castration resistant prostate cancer.

  Dataset EGAD00001008762

• 5 human plasma cell-free DNA cases (BS-seq)

  5 human plasma cell-free DNA cases (BS-seq)

  Dataset EGAD00001008809

• 11 plasma cases and 4 urine cases (mouse)

  11 plasma cases and 4 urine cases (mouse)

  Dataset EGAD00001009829

• RNA-seq from melanoma biopsies

  RNA-seq data for melanoma biopsies at baseline and after treatment

  Dataset EGAD00001009059

• Whole Exome Sequencing

  Whole Exome Sequencing Data for 10 patients for treatment with the ICI Nivolumab

  Dataset EGAD00001011117

• Linked-reads for Juvenile Pilocytic Astrocytomas

  Matched tumor-normal data for 6 JPAs. Generated using 10X Genomics Linked-reads

  Dataset EGAD00001011114

• mPAS- NXPE1 O-acetylation

  Paired-end fastq files from whole genome sequencing on Illumina HiSeq 4000 generated using bcl2fastq.

  Dataset EGAD00001015410

• Whole genome sequencing of Crohn's disease patients

  Population based sequencing of whole genomes of Crohn's disease patients.

  Dataset EGAD00001000401

• GENCORD2_RNAseq

  GENCORD2 RNA-seq BAM files using BWA

  Dataset EGAD00001000425

• Carcinosarcoma Exome Sequencing Data

  Whole exome sequencing data from tumor and normal samples from carcinosarcoma (malignant mixed mullerian tumor) patients

  Dataset EGAD00001000987

• DATA FILES FOR PCGP SJINF WES

  DATA FILES FOR PCGP SJINF WES

  Dataset EGAD00001001245

• HipSci - Monogenic Diabetes - Exome Sequencing - April 2015

  HipSci - Monogenic Diabetes - Exome Sequencing - April 2015

  Dataset EGAD00001001949

• Gene expression from human iPSC derived motor neurons.

  Gene expression from human iPSC derived motor neurons.

  Dataset EGAD00001005216

• UK10K_RARE_SIR UK10K_EXOME_EXTRAS

  UK10K_RARE_SIR UK10K_EXOME_EXTRAS

  Dataset EGAD00001000757

• WEHI AML Multiome Committee

  This committee oversees access to data generated as part of AML research study at WEHI, ensuring compliance with privacy regulations and ethical standards.

  Dac EGAC50000000912

• Sexual dimorphism in human immune system aging

  We isolated peripheral blood mononuclear cells (PBMCs) from 172 community-dwelling healthy volunteers (91 women, 81 men) ages spanning adult lifespan: 54 young (ages 22-40: 23 men, 31 women), 59 middle-aged (ages 41-64: 31 men, 28 women), and 59 older subjects (65+: 27 men, 32 women). PBMCs were profiled using ATAC-seq (54 men, 66 women), RNA-seq (41 men, 34 women), and flow cytometry (62 men, 67 women). Flow cytometry data is publicly available, genomic data for 121 individuals are provided here. These datasets revealed immune system aging signatures in men and women and showed in which ways aging differentially affects the immune systems of men and women. A subset of these samples have been generated and analyzed previously and can be found at EGA (EGAS00001002605). This dataset on dbGaP include EGA samples as well.

  Study phs001934

• Isolation of bacteria in infected brains in patients with Parkinsons disease. Here we used next generation sequencing of 16S ribosomal RNA gene PCR amplicons (NGS 16S amplicon analysis).

  Dac EGAC00001001197

• DAC for Combined MEK and BCL-2/XL inhibition is effective in high-grade serous ovarian cancer patient-derived xenograft models and BIM levels are predictive of responsiveness

  Dac EGAC00001001250

• Covid-19 HGI

  Dac EGAC00001002188

• EGAD00000000045

  Genomic sequencing and transcriptome shotgun sequencing of a metastatic tumour and its recurrence after drug therapy in a single patient

  Dataset EGAD00000000045

• EGAD00010000604

  DNA methylation data using Illumina 450K

  Dataset EGAD00010000604

• EGAD00010000124

  Psoriasis cases as part of WTCCC2 phase 2

  Dataset EGAD00010000124

• EGAD00010000144

  Healthy volunteer collection of European Ancestry

  Dataset EGAD00010000144

• EGAD00010000282

  Pharmacogenomic response to Statins samples (Genotypes/Phenotypes)

  Dataset EGAD00010000282

• EGAD00010000520

  Healthy volunteer collection of European Ancestry

  Dataset EGAD00010000520

• Somatic Histone H3 mutations

  Somatic Histone H3 mutations

  Dataset EGAD00001000085

• Acute Lymphoblastic Leukemia Exome sequencing 2

  Acute Lymphoblastic Leukemia Exome sequencing 2

  Dataset EGAD00001000104

• Mutational landscapes of primary triple negative breast cancers - WGS

  Mutational landscapes of primary triple negative breast cancers - WGS

  Dataset EGAD00001000115

• UK10K_RARE_NEUROMUSCULAR REL-2012-01-13

  UK10K_RARE_NEUROMUSCULAR REL-2012-01-13

  Dataset EGAD00001000180

• UK10K_RARE_NEUROMUSCULAR REL-2012-02-22

  UK10K_RARE_NEUROMUSCULAR REL-2012-02-22

  Dataset EGAD00001000189

• RNA sequencing of colon tumor/normal sample pairs

  RNA sequencing of colon tumor/normal sample pairs

  Dataset EGAD00001000215

• Exome capture sequencing of colon tumor/normal pairs

  Exome capture sequencing of colon tumor/normal pairs

  Dataset EGAD00001000216

• UK10K_RARE_NEUROMUSCULAR REL-2012-07-05

  UK10K_RARE_NEUROMUSCULAR REL-2012-07-05

  Dataset EGAD00001000219

• Deep RNA sequencing in CLL

  Deep RNA sequencing in CLL

  Dataset EGAD00001000258

• UK10K_RARE_NEUROMUSCULAR REL-2012-11-27

  UK10K_RARE_NEUROMUSCULAR REL-2012-11-27

  Dataset EGAD00001000298

• UK10K_NEURO_ABERDEEN REL-2012-11-27

  UK10K_NEURO_ABERDEEN REL-2012-11-27

  Dataset EGAD00001000315

• UK10K_NEURO_EDINBURGH REL-2012-11-27

  UK10K_NEURO_EDINBURGH REL-2012-11-27

  Dataset EGAD00001000317

• UK10K_NEURO_GURLING REL-2012-11-27

  UK10K_NEURO_GURLING REL-2012-11-27

  Dataset EGAD00001000319

• Dyslipidemia

  These samples include exome sequences of family members with dyslipidemias from Finnish origin.

  Dataset EGAD00001000347

• UK10K_NEURO_GURLING REL-2013-04-20

  UK10K_NEURO_GURLING REL-2013-04-20

  Dataset EGAD00001000440

• Dataset of CageKid Blood DNA samples

  Dataset of CageKid Blood DNA samples

  Dataset EGAD00001000709

• Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

  Dataset EGAD00001000856

• CPCG-200PG-ARRAY

  Raw Array data from the CPCGene 200PG study

  Dataset EGAD00010001218

• ega_SJLIFE_BMD_nonALL

  A replication cohort consisting of 1428 adult survivors of any non-ALL pediatric cancer

  Dataset EGAD00010001395

• GEP_DKFZ_JMML_DBL

  Gene expression analysis from primary human JMML samples using Illumina Human HT-12 v4

  Dataset EGAD00010001430

• cqmuGWAS1

  DNA for 1546 individuals from Chongqing was extract from peripheral blood and genotyped by Illumina Omni Zhonghua-8 version 1 gene chips.

  Dataset EGAD00010001527

• PMBCL IL4R DASL

  Expression data for 42 PMBCL patient samples (32 IL4R WT cases and 10 cases with mutations in IL4R)

  Dataset EGAD00010001542

• Copy number profiling of primary samples and cell lines of retinoblastoma

  Illumina SNP-arrays for matching retinoblastoma-blood pairs and retinoblastoma cell lines.

  Dataset EGAD00010000908

• oacoch-M-1

  Methylation changes in OA patients with chronic exposure to cobalt and chromium

  Dataset EGAD00010001040

• DNA Methylation profiles of colorectal cancer samples

  Illumina 450K DNA methylation profiles of 314 fresh-frozen colorectal mucosa, adenoma or adenocarcinoma samples.

  Dataset EGAD00010001888

• Proteom study primary CRC and LM

  Proteom characterization in primary colorectal cancer and corresponding liver metastasis

  Dataset EGAD00010002237

• CIRdb-CEU1

  Single Nucleotide Polymorphisms in autosomes of Canary Islanders

  Dataset EGAD00010002294

• Serum Proteomics of Aortic Diseases

  Comparative proteome-based analysis of different autologous bone entities used for alveolar onlay grafting

  Dataset EGAD00010002314

• OSC HumanCoreExome Genotypes

  DNA was extracted from saliva samples and genotyping was performed on Illumina Infinium HumanCoreExome beadchips.

  Dataset EGAD00010002375

• PDAC organoid genomic heterogeneity

  Two primary tumor-derived PDAC organoids were subjected to SNP array, RNA-seq, and single-cell WGS

  Dataset EGAD00010002408

• Transcriptome of (peripheral blood), from donor Sample A, replicate 1 FACS processing technical replicates

  FACS processing technical replicates

  Dataset EGAD00001010086

• nwa.data.IF.papers

  Genome-wide SNP from 221 individuals from Northwestern Amazonia genotyped on the Affymetrix Human Origins Array

  Dataset EGAD00010002394

• Transcriptome of (peripheral blood), from donor Sample A, replicate 2 FACS processing technical replicates

  FACS processing technical replicates

  Dataset EGAD00001010087

• UM

  metabolite levels provided by UM platform (Creative Dynamics Inc, NY, USA) (the data is raw abundance. Mapping was applied on log10 transformed data)

  Dataset EGAD00010002146

• SNParray_PGT_samples_scGBS

  PGT samples for haplotyping and copy-number profiling via SNP array

  Dataset EGAD00010002169

• SNParray_HapMap_samples_scGBS

  HapMap samples for haplotyping and copy-number profiling via SNP array

  Dataset EGAD00010002168

• Knoll et al Identification of drug candidates targeting monocyte reprogramming in people living with HIV

  Bulk RNAseq PBMC

  Dataset EGAD50000000068

• Bulk tumor RNASeq RPMK files from 65 patients

  Bulk tumor RNASeq RPKM files from 65 patients.

  Dataset EGAD50000000126

• scRNAseq data of HGSOC patients before and after treatment

  scRNAseq data of HGSOC patients before and after treatment

  Dataset EGAD50000000191

• Granulosa cell tumor

  Genome-wide NanoRCS of cfDNA from plasma of Granulosa cell tumor patients

  Dataset EGAD50000000218

• Multiregion exome sequencing of ovarian immature teratomas

  Clinicopathologic features of the ten patients with ovarian immature teratomas studied by whole-exome sequencing

  Dataset EGAD50000000421

• scRaCH-seq data targeting BTK and SF3B1

  Data set for scRaCH-seq manuscript. We base call the fast5 using guppy.

  Dataset EGAD50000000235

• Single-Cell RNA-seq of Primary High Grade Serous Carcinoma

  Single-cell RNA Sequencing of CD45- cancer cells.

  Study EGAS50000000068

• HMO-microbiome study dataset, 16S sequencing

  This dataset contains 16S sequencing of fecal and milk samples for HMO-microbiome Lifelines NEXT study

  Dataset EGAD50000000532

• cfRRBS data plasma healthy donor

  cfRRBS data produced from the cfDNA in plasma isolated from healthy, adult donors.

  Dataset EGAD50000000553

• H3K27ac ChIP-seq in Insulinomas

  H3K27ac ChIP-seq datasets in human insulinoma samples

  Dataset EGAD50000000461

• Cancer Genomics, ICR, summary data

  DAC for summary level data from the Cancer Genomics group, Division of Genetics and Epidemiology at the Institute of Cancer Research, Sutton, UK.

  Dac EGAC50000000050

• Center of Medical Genetics Ghent - lab BMN

  This is a DAC created to contain datasets generated in lab BMN, part of the Center of Medical Genetics Ghent, Belgium.

  Dac EGAC50000000351

• H3Africa KDRN Genotype

  The 6431 samples were genotyped on the H3Africa array.

  Dataset EGAD00010002365

• Targeted nanopore sequencing of MARCHF6 repeat expansions

  This dataset includes FASTQ files from MARCHF6 alleles sequenced by targeted nanopore in 8 patients.

  Dataset EGAD50000000812

• Exonic Counts

  Read counts, per gene, aligning to exons. Alignment performed with GSNAP. 20 samples.

  Dataset EGAD50000000820

• PDiamond Korean Lung Cancer Data

  WES and RNA-seq data of PDiamond Korean lung cancer data

  Dataset EGAD50000000844

• Foundation Medicine Binary Calls

  Binary calls for all available samples in 4 Atezo trials.

  Dataset EGAD50000000709

• Identification of improved IL28B SNPs and haplotypes for prediction of drug response in treatment of hepatitis C using massively parallel sequencing in a cross-sectional European cohort

  Study EGAS00001000096

• Whole Exome Sequencing data from Neodurvarib Clinical Trial

  Sequencing data related to the genomic profiling of advanced urotelial carcinomas, including tissues from pre and postneoadyuvancy (Olaparib and Durvalumab)

  Dac EGAC50000000471