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• RNA-Seq of SMARCB1 re-expression and HDAC+mTOR inhibition experiments in malignant rhabdoid tumor organoids

  Dataset EGAD00001006574

• Whole-genome and transcriptome sequencing of a patient with extrapancreatic acinar cell carcinoma

  Dataset EGAD00001006023

• Whole-genome and transcriptome sequencing data of an undifferentiated gastric spindle cell sarcoma

  Dataset EGAD00001006014

• RNA-seq, WGS and WES of Hepatocellular carcinomas, enriched in fibrolamellar carcinomas

  Dataset EGAD00001005308

• Sequencing .bam files

  Sequencing of untreated pancreatic cancer metastases and primary tumor sections.

  Dataset EGAD00001003153

• HiSeqXTen sequencing of tumour-normal sample pairs from three mesothelioma patients

  Aligned, merged and deduplicated BAM files from HiSeqXTen sequencing of six samples: matched tumour-normal pairs from three melanoma patients.

  Dataset EGAD00001003222

• GENOMIC INSTABILITY IN MISMATCH REPAIR DEFICIENT COLORECTAL CANCER WES MSI Colorectal Cancer

  This dataset contains Whole Exome Sequencing of 47 MSI colorectal cancers (CRCs) and paired adjacent normal mucosa

  Dataset EGAD00001004550

• Kidney Cancer Heterogeneity and Evolution Revealed by Multi-Region Exome Sequencing

  Paired end Illumina sequencing of whole exomes of multiple tumour regions.

  Dataset EGAD00001000734

• ICGC Korean Breast Cancer Project

  A comprehensive characterisation and analysis of human breast cancers through whole-genome sequencing.

  Dataset EGAD00001001322

• Exome sequencing reads

  Exome sequencing reads of two UFM individuals and their family members (totally 11 individuals) belonging to two different Fragile X families. Alignment files in BAM format are provided.

  Dataset EGAD00001002276

• Exome sequencing of FFPE sample

  Bam file from exome sequencing of FFPE sample from Ly3 using SeqCap EZ Human Exome Library (Roche Nimblegen, Inc., WI, USA) and Illumina HiSeq2000 sequencer.

  Dataset EGAD00001004782

• Accelerated clonal evolution in refractory versus relapsed chronic lymphocytic leukemia upon treatment

  Identify and track clonal evolution of clones in consecutive human chronic lymphocytic leukemia samples identified by whole exome sequencing.

  Dataset EGAD00001005058

• BAM files corresponding to PARN mutations identified in Hoyeraal-Hreidarsson syndrome patients

  PARN sequences of Patients 1 and 2 carrying mutatoins as decribed in Benyelles et al., EMBO Molecular Medicine 2019)

  Dataset EGAD00001005125

• HGS-3 - nanopore

  WGS Nanopore nanopore sequencing of organoid line HGS-3.1 and matching blood reference HGS-3

  Dataset EGAD00001005476

• Multiregional non-invasive genetic characterization of MM

  Genomic characterization (through whole-exome sequencing) of circulating tumor cells, bone marrow clonal plasma cells and extramedullary plasmacytomas from multiple myeloma patients.

  Dataset EGAD00001006028

• MDS MSC

  bam files, mapped to hg19 after dedup, recal, recalibration and clipping of overlapping redas

  Dataset EGAD00001006968

• Pharmacogenomics of T-ALL

  Whole exome seq (N=21) and RNA-seq (N=36) data of additional T-ALL

  Dataset EGAD00001006434

• Metagenome Sequencing Data Cachexia Non-Cachexia

  120 samples of cachectic and non cachectic. 240 Fastq files from Illumina metagenomic shothun paired End Sequencing

  Dataset EGAD00001010279

• HCA Organoids | Colon - Cancer, Multiome Sequencing Data

  Multiome sequencing of patient tissue and patient derived organoids in colon cancer

  Dataset EGAD00001015504

• RNA seq samples

  Dataset contains 12 RNA-Seq samples sequenced on the Illumina NextSeq500 sequencer. 6 samples are controls (D1-Tact-Plasma,D2-Tact-Plasma,D3-Tact-Plasma,D1-TUnstim-Plasma,D2-TUnstim-Plasma,D3-TUnstim-Plasma) 6 samples are case (D1-Tact-SF,D2-Tact-SF,D3-Tact-SF,D1-TUnstim-SF,D2-TUnstim-SF,D3-TUnstim-SF)

  Dataset EGAD50000001189

• ChIP seq samples

  Dataset contains 12 ChIP-Seq samples sequenced on the Illumina NextSeq500 sequencer. 3 samples are control samples (HcAct-Chip 1,HcAct-Chip 2,HcAct-Imput 2) 9 samples are case samples (HcAct2DG-Chip 1,HcAct2DG-Chip 2,HcAct2DG-Imput 1,JIAAct-Chip1,JIAAct-Chip2,JIAAct-Imput2,JIAAct2DG-Chip1,JIAAct2DG-Chip2,JIAAct2DG-Imput2)

  Dataset EGAD50000001188

• bfast CohortD ctDNA manifest

  A list of ctDNA samples included in the dataset.

  Dataset EGAD50000000146

• Feasibility of targeted capture sequencing in routinely collected FFPE cancer specimens

  Testing the feasibility of genome-scale sequencing in routinely collected formalin-fixed paraffin-embedded (FFPE) cancer specimens versus matched fresh-frozen samples using targeted pulldown capture prior to Illumina sequencing.

  Dataset EGAD00001000354

• NGS reads files of PSCCE

  The aligned bam file of next generation sequencing performed on PSCCE.

  Dataset EGAD00001007002

• iAMP21 RNAseq data set

  RNAseq samples from the iAMP21 study

  Dataset EGAD00001007577

• Tampere University Celiac Disease Research Data Access Committee

  This DAC will be used to reposit RNAseq data from intestinal biopsies of celiac disease patients on gluten-free diet and post-gluten challenge treated with placebo or TG2 inhibitor

  Dac EGAC50000000233

• Single cell RNA sequencing of samples from core and periphery of human glioblastoma

  Samples taken from various regions of three human glioblastomas were subject to single cell RNA sequencing.

  Dataset EGAD50000002080

• SIA Subtyping RNA Sequencing

  Associated with Molecular classification of small intestinal adenocarcinomas. RNA sequencing generated 849 .fastq files from 137 primary and recurrent small intestine adenocarcinoma samples from 135 patients.

  Dataset EGAD50000001762

• Long-read dataset

  Long-read transcriptomic data of control and FECD exp positive CECs

  Dataset EGAD50000000435

• Lifelines NEXT 16S v3-v4 amplicon sequencing

  16S v3-v4 amplicon sequencing of milk, fecal and oral cavity samples, along with sequencing controls, of a subset of newborn infants from Lifelines NEXT cohort

  Dataset EGAD50000000180

• RNAseq_Landscape

  RNAseq reads were aligned with STAR 2.5.3a and gene expression was quantified with RSEM 1.3.0

  Dataset EGAD00010001703

• CNV dataset

  Rare CNVs from schizophrenia cases and controls

  Dataset EGAD00010001074

• BGISeq-500 sequencing of tumour-normal sample pairs from three mesothelioma patients

  Aligned, merged and deduplicated BAM files from BGISeq-500 sequencing of six samples: matched tumour-normal pairs from three melanoma patients.

  Dataset EGAD00001003221

• Patient-derived organoids from gastrointestinal cancers

  Patient-derived organoids model treatment response of metastatic gastrointestinal cancers (80 targeted exome capture samples and 2 whole-genome sequencing samples)

  Dataset EGAD00001003926

• Exome sequenvcing of colitis associated carcinomas

  Exome sequencing was performed on fresh-frozen multiple regions of carcinoma, adjacent non-cancerous mucosa and blood from 12 CA-CRC patients (n=55 exomes).

  Dataset EGAD00001004275

• RNA-seq sequence data from DNMT3A microcephalic dwarfism patients.

  RNA-seq data generated from cells from control individuals and individuals with de novo DNMT3A variants causing microcephalic dwarfism.

  Dataset EGAD00001004471

• DNMT3A MOPD patient ChIP-seq data

  ChIP-seq data from controls and patients with de novo DNMT3A mutations resulting in microcephalic primordial dwarfism.

  Dataset EGAD00001004473

• Whole exome sequencing of HCCs in children with bile salt export pump deficiency

  Whole exome sequencing of 6 HCCs and matched background liver in children with bile salt export pump deficiency.

  Dataset EGAD00001000811

• Bulk exome sequencing of primary GBM - SF 10360

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10360

  Dataset EGAD00001002274

• TFL unique case study

  Whole exome sequencing of a normal sample, primary tumor sample, and relapse tumor sample of a transformed non-Hodgkins follicular lymphoma patient with extraordinary response to treatment.

  Dataset EGAD00001002707

• Polyomavirus-positive Merkel cell carcinoma derived from a trichoblastoma suggests an epithelial origin of Merkel cell carcinoma

  Tricholastoma (TB): Exome Merkel cell carcinoma (MCC): Genome and Exome Healthy tissue (HT): Exome

  Dataset EGAD00001005223

• bladder cancer patient data

  This contains H3K27ac ChIP-seq, RNA-seq and HiC fastq files.

  Dataset EGAD00001007052

• Whole genome sequencing of a breast cancer cohort with known functional homologous recombination status

  41 breast cancer patients with known functional homologous recombination status (matched normal and tumor genomes, n=82)

  Dataset EGAD00001008027

• Genomic Analysis of Focal Nodular Hyperplasia with Associated Hepatocellular Carcinoma Unveils its Malignant Potential

  Whole exome sequencing of FNH and two HCC compartments from a single patient, along with matched germline.

  Dataset EGAD00001007702

• NKI PRECSION Mutations

  38 samples with DCIS and matched recurrences sequenced with a targeted mutation panel on IonTorrent.

  Dataset EGAD00001008338

• Berlin Neuroblastoma Patient Genomic Data from Targeted Sequencing

  Targeted DNA sequencing data of paired primary and relapse tumor material taken from a pediatric patient with neuroblastoma.

  Dataset EGAD00001008564

• Sexual dimorphism AR RNASeq

  Human (n=34) and mice (n=68) melanoma tumor WXS dataset.

  Dataset EGAD00001008708

• MTM-HD - fibroblast RNAseq

  MTM-HD - fibroblast RNAseq. 57 samples from controls, pre-HD and early-HD patients.

  Dataset EGAD00001009104

• MTM-HD - adipose tissue RNAseq

  MTM-HD - adipose tissue RNAseq. 60 samples from controls, pre-HD and early-HD patients

  Dataset EGAD00001009105

• KUI6280

  RNA seq data normal and hypomethylation

  Dataset EGAD00001009887