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• Screening for abnormal CGI methylation in primary colorectal tumours

  Screening for abnormal CGI methylation in primary colorectal tumours

  Dataset EGAD00001000213

• Asian Genome Project(BioBank Japan genotype data)

  Biobank Japan registrants sequenced for Asian Genome Project

  Study JGAS000647

• FFPE_Normal_Panel_V3_Cancer_Panel

  FFPE normal panel generation for use with V3 cancer panel 0618521

  Study EGAS00001000836

• Heart

  Whole-Exome-Sequencing of 5 pooled patients for SNP-based demultiplexing

  Study EGAS50000000655

• Oxford Nanopore sequencing for APL

  Raw fast5 file of Oxford Nanopore sequencing for an APL patient sample

  Dataset EGAD00001008151

• snv calls for subclonal reconstruction

  single nucleotide variant calls from somatic sniper, vcf format. input for subclonal reconstruction

  Dataset EGAD00001003753

• Identifying causative mutations for Thrombocytopenia with Absent Radii

  Identifying causative mutations for Thrombocytopenia with Absent Radii

  Dataset EGAD00001000018

• Single cell RNA sequencing of CD19 CAR T-cell infusion products

  We performed single cell RNA sequencing of remnants from CD19 CAR T-cell infusion products used for standard of care treatment for relapsed/refractory large B-cell lymphoma. Libraries were prepared using 10X 5’ GEX chemistry and sequenced on an Illumina HiSeq 4000 to obtain >50,000 reads per cell.

  Study EGAS00001004576

• Dataset for manuscript titled: Spatial Intra-Tumour Heterogeneity and Treatment-Induced Genomic Evolution in Oesophageal Adenocarcinoma: Implications for Prognosis and Therapy

  Dataset for manuscript titled: Spatial Intra-Tumour Heterogeneity and Treatment-Induced Genomic Evolution in Oesophageal Adenocarcinoma: Implications for Prognosis and Therapy

  Dataset EGAD00001015373

• Organoid Derivation Project - RNAseq (2024-10-14)

  Sequencing of tissue samples and their derived organoids. This dataset contains a subset of colorectal and colorectal liver metastasis samples.

  Dataset EGAD00001015425

• PBMC

  Whole-Exome-Sequencing of 5 pooled patients for SNP-based demultiplexing

  Study EGAS50000000654

• SNP Array Data for EGAS00001004666

  SNP Array Data for EGAS00001004666

  Dataset EGAD00010002257

• Australian genomes

  Mapped data (bam files) for high-throughput whole genome sequence data for 83 modern Aboriginal Australians

  Dataset EGAD00001002001

• WGS and WXS files for Dyer ATRX study

  WGS and WXS files for Dyer ATRX study

  Dataset EGAD00001003389

• DATA FILES FOR PCGP SJETP WXS

  DATA FILES FOR PCGP SJETP WXS

  Dataset EGAD00001001248

• DATA FILES FOR SJAMLM7

  DATA FILES FOR SJAMLM7

  Dataset EGAD00001000259

• "Usage of small amounts of DNA for Illumina sequencing"

  "Usage of small amounts of DNA for Illumina sequencing"

  Dataset EGAD00001000034

• WES used for direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

  We performed whole exome sequencing of tumor- as well as PBMC-derived DNA of five melanoma patients for identification of naturally presented patient-specific neoepitopes.

  Study EGAS00001002050

• PPGL RNA-Seq dataset

  Dataset includes fastq files for RNA-Seq experiments for tumor samples of PPGL patients. Single end reads fastq files are available for 102 different samples

  Dataset EGAD00001008578

• Exome and RNA sequencing data for Diffuse Large B Cell Lymphomas

  Exome sequencing data for 1001 DLBCL patients and RNA sequencing data for 775 DLBCL patients

  Dataset EGAD00001003600

• BLUEPRINT September 2016, ATAC-seq for monocyte RPMI_BG_T=24hrs_RPMI_T=5days_LPS_T=4hrs from venous blood, on Genome GRCh38

  ATAC-seq data for 1 sample(s) for monocyte RPMI_BG_T=24hrs_RPMI_T=5days_LPS_T=4hrs from venous blood, on Genome GRCh38. 1 run(s), 1 experiment(s), 1 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002915

• BLUEPRINT September 2016, ATAC-seq for class switched memory B cell from venous blood, on Genome GRCh38

  ATAC-seq data for 2 sample(s) for class switched memory B cell from venous blood, on Genome GRCh38. 2 run(s), 2 experiment(s), 2 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002908

• Pulldown_DNA_methylation_study_v2

  Pilot study to set up sequencing protocols for targeted pulldown methylation profiling

  Study EGAS00001000979

• Preeclampsia InterPregGen Consortium: GWAS meta-analysis summary statistics for European fetal preeclampsia cases versus controls and GWAS genotype data for European fetal preeclampsia cases

  Study EGAS00001001048

• PBMC_dual_10X_kit

  Dual snRNAseq and ATACseq of replicate PBMC samples for 10X beta testing.

  Study EGAS00001004834

• Dataset for TIX

  All files for TIX individuals

  Dataset EGAD50000000426

• RNAseq for 4 pdx and 1 cell-line

  RNAseq for #1049, #111, #1217, #206, COV362

  Dataset EGAD50000000032

• Dataset for "Genomic landscape of oral cancers" (CGI WGS)

  Dataset for "Genomic landscape of oral cancers" (CGI WGS)

  Dataset EGAD00001004339

• Dataset for "Genomic landscape of oral cancers" (Illumina WGS)

  Dataset for "Genomic landscape of oral cancers" (Illumina WGS)

  Dataset EGAD00001004356

• DATA FILES FOR PCGP Dyer_iPSC WGS

  DATA FILES FOR PCGP Dyer_iPSC WGS

  Dataset EGAD00001001415

• DATA FILES FOR PCGP Dyer_iPSC TEBS

  DATA FILES FOR PCGP Dyer_iPSC TEBS

  Dataset EGAD00001001416

• DATA FILES FOR PCGP Dyer_iPSC 5hmc

  DATA FILES FOR PCGP Dyer_iPSC 5hmc

  Dataset EGAD00001001418

• McGill EMC Release 4 for assay "H3K9me3"

  McGill EMC Release 4 for assay "H3K9me3"

  Dataset EGAD00001001299

• McGill EMC Release 4 for assay "H3K27me3"

  McGill EMC Release 4 for assay "H3K27me3"

  Dataset EGAD00001001294

• McGill EMC Release 4 for assay "H3K36me3"

  McGill EMC Release 4 for assay "H3K36me3"

  Dataset EGAD00001001295

• McGill EMC Release 4 for assay "H3K4me1"

  McGill EMC Release 4 for assay "H3K4me1"

  Dataset EGAD00001001296

• McGill EMC Release 4 for assay "H3K4me3"

  McGill EMC Release 4 for assay "H3K4me3"

  Dataset EGAD00001001297

• McGill EMC Release 4 for assay "H3K27ac"

  McGill EMC Release 4 for assay "H3K27ac"

  Dataset EGAD00001001298

• DATA FILES FOR PCGP SJMEL RNASEQ

  DATA FILES FOR PCGP SJMEL RNASEQ

  Dataset EGAD00001001247

• DATA FILES FOR PCGP SJMEL WXS

  DATA FILES FOR PCGP SJMEL WXS

  Dataset EGAD00001001246

• DATA FILES FOR SJEPD

  DATA FILES FOR SJEPD

  Dataset EGAD00001000853

• DATA FILES FOR SJEPD

  DATA FILES FOR SJEPD

  Dataset EGAD00001000854

• BLUEPRINT: DNaseI-seq for monocytes

  DNaseI-seq for monocytes

  Dataset EGAD00001000674

• DATA FILES FOR SJLGG

  DATA FILES FOR SJLGG

  Dataset EGAD00001000352

• DATA FILES FOR SJLGG

  DATA FILES FOR SJLGG

  Dataset EGAD00001000353

• RNAseq for 8 PDX

  RNAseq for #111, #1177, #206, #201, #29, #931, WO-19, WO-2

  Dataset EGAD50000000116

• Linked-reads for Juvenile Pilocytic Astrocytomas

  Matched tumor-normal data for 6 JPAs. Generated using 10X Genomics Linked-reads

  Dataset EGAD00001011114

• DATA FILES FOR SJINF RNASeq

  DATA FILES FOR SJINF RNASeq

  Dataset EGAD00001001098

• DATA FILES FOR Histone Capture bams

  DATA FILES FOR Histone Capture bams

  Dataset EGAD00001000657

• Dataset for Ewing_sarcoma_PNET-RNA

  Rare cancer sequencing data of 28 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired

  Dataset EGAD00001008845