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• DAC: The genomic landscape of primary cutaneous anaplastic large cell lymphoma (pcALCL)

  Dac EGAC00001001607

• Data Access Committee for the project: Epic arrays from human OB and their mimics

  Dac EGAC00001002482

• The Data Access Committee for Human Olfactory Mucosa Cells (DAC_HOM) at UEF

  Dac EGAC00001002527

• The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG)

  Dac EGAC00001002733

• The EMC-NICHE DAC considers appeals for hematopoietic/niche-related data sets.

  Dac EGAC00001001897

• EGAD00000000074

  Gabriel samples from the Swedish BAMSE Cohort

  Dataset EGAD00000000074

• EGAD00000000075

  Gabriel samples from the Swedish BAMSE Cohort

  Dataset EGAD00000000075

• EGAD00000000076

  Gabriel samples from the Australian Bussleton Cohort

  Dataset EGAD00000000076

• EGAD00000000077

  Gabriel samples from the Australian Bussleton Cohort

  Dataset EGAD00000000077

• EGAD00000000082

  Gabriel samples from the French EGEA Cohort

  Dataset EGAD00000000082

• EGAD00000000083

  Gabriel samples from the French EGEA Cohort

  Dataset EGAD00000000083

• EGAD00000000086

  Gabriel samples from the multicenter GAIN cohort

  Dataset EGAD00000000086

• EGAD00000000087

  Gabriel samples from the multicenter GAIN cohort

  Dataset EGAD00000000087

• EGAD00000000088

  Gabriel samples from the Karelia Allergy Study

  Dataset EGAD00000000088

• EGAD00000000089

  Gabriel samples from the Karelia Allergy Study

  Dataset EGAD00000000089

• EGAD00000000090

  Gabriel samples from the Russian KMSU cohort

  Dataset EGAD00000000090

• EGAD00000000091

  Gabriel samples from the Russian KMSU cohort

  Dataset EGAD00000000091

• EGAD00000000092

  Gabriel samples from the German MAGIS cohort

  Dataset EGAD00000000092

• EGAD00000000093

  Gabriel samples from the German MAGIS cohort

  Dataset EGAD00000000093

• EGAD00000000094

  Gabriel samples from the UK MRCA cohort

  Dataset EGAD00000000094

• EGAD00000000101

  Gabriel samples from the Russian TOMSK cohort

  Dataset EGAD00000000101

• EGAD00000000102

  Gabriel samples from the Russian TOMSK cohort

  Dataset EGAD00000000102

• EGAD00000000103

  Gabriel samples from the Russian UFA cohort

  Dataset EGAD00000000103

• EGAD00000000104

  Gabriel samples from the Russian UFA cohort

  Dataset EGAD00000000104

• EGAD00000000105

  Gabriel samples from the multicenter occupational cohort

  Dataset EGAD00000000105

• EGAD00000000106

  Gabriel samples from the multicenter occupational cohort

  Dataset EGAD00000000106

• EGAD00000000107

  Gabriel samples from the multicenter occupational cohort

  Dataset EGAD00000000107

• EGAD00000000108

  Gabriel samples from the UK AUGOSA cohort

  Dataset EGAD00000000108

• EGAD00000000109

  Gabriel samples from the UK SEVERE cohort

  Dataset EGAD00000000109

• The colon KRAS/BRAF variants detection set

  Dataset EGAD00001000835

• Mesothelima_OSCHP_Files

  Oncoscan CHP files for the Mesothelemia Project

  Dataset EGAD00010001540

• Translational Gastroenterology Unit, University of Oxford Data Access Committee for the EPIC-CD study

  Dac EGAC00001003481

• The University of Hong Kong Gastric Cancer Organoids RHO Signaling Study Data Access Committee

  Dac EGAC00001002705

• Data access committee for datasets generated by the Tampere University Computational Biology research group

  Dac EGAC50000000177

• Targeted next-generation sequencing of 13 chordoid gliomas of the third ventricle

  Study EGAS00001002733

• scATAC-seq and combined scRNA-seq of the human first trimester neurodevelopment

  Study EGAS00001007472

• Breast Cancer Histology Images

  Fresh frozen breast cancer H&E tissue images collected and annotated by the International Cancer Genome Consortium (ICGC), that included the BASIS collaboration. Associated with whole genome sequence data as originally described by Nik-Zainal et al, Nature, 2016 (DOI: 10.1038/nature17676) and deposited with ID EGAS00001001178

  Dataset EGAD00010001911

• Prospective cohort patients with Multiple sclerosis and controls

  The sys4MS cohort comprises 350 patients with Multiple Sclerosis (MS) and 9 controls, with 2 years of follow-up. Baseline data includes demographics, clinical scales, disease duration and subtype and use of disease-modifying drugs, brain MRI (volumetry and lesion load), retinal thickness by OCT, genomics (GWAS), cytomics, and phosphoproteomics. Data at the end of follow-up includes clinical scales, brain MRI and OCT.

  Dataset EGAD00010002505

• Evaluating potential drug candidates for the treament of Henamgiopericytoma on patient derived cell line models

  Solitary fibrous tumor/Hemangiopericytoma (SFT/HPC) is a rare subtype of soft tissue sarcoma associated with NAB2-STAT6 gene fusions. This study established and characterized a novel SFT/HPC patient-derived cell line called SFT-S1. Potential drug candidates that could be repurposed for the treatment of SFT/HPC were screened. Screening was performed through RNA-Seq

  Dataset EGAD50000000039

• Whole exome sequencing of FFPE material from 41 pediatric BCP-LBL patients.

  This study contain the results of whole exome sequencing analyses of FFPE material from 41 pediatric B-cell precursor lymphoblastic lymphoma patients. Samples were sequenced with a target coverage of 200x. Data are provided as Fastq files.

  Study EGAS50000000290

• Dataset for WGS and RNA samples of acute myeloid leukemia with MNX1 expression (non-hipo)

  This dataset contains 115 samples of WGS, ATAC, 4C and RNAseq samples of patients with acute myeloid leukemia. The sequencing was performed on Illumina HiSeq 4000, 2000 and HiSeq X using Illumina TruSeq Nano DNA and Agilent Strand Specific RNA Kits. The sequencing was always paired.

  Dataset EGAD50000001097

• Single-cell Transcriptome Analysis of Plasma Cells Across the Disease Spectrum of Multiple Myeloma

  This dataset includes FastQ files of single-cell RNA sequencing data of 5' GEX and VDJ libraries from CD138+ plasma cells enriched from 72 bone marrow aspirates from patients diagnosed with a monoclonal gammopathy from the multiple myeloma spectrum, including MGUS (n=13), SMM (n = 22), NDMM (n = 17), RRMM (n = 15) and PCL (n = 2); and 3 controls.

  Dataset EGAD50000001179

• scD&D Multiome of GATA1 regulatory network dynamics during erythropoiesis

  Ex vivo differentiation experiments of human CD34+ hematopoietic stem and progenitor cells and profiled cells along the erythropoietic trajectory at multiple timepoints (differentiation days 0, 5, 8, 18, and 24), for simultaneous assessment of transcriptome, chromatin accessibility and GATA1 binding

  Study EGAS50000001606

• 10X snMultiome (ATAC+GEX) for the study of "SPEN loss drives extra-follicular diffuse large B cell lymphoma with female-specific lethality and TLR pathway therapeutic vulnerabilities"

  10X snMultiome (ATAC+GEX) sequencing of 1 human reactive tonsil sample and 1 DLBCL sample for the study of "SPEN loss drives extra-follicular diffuse large B cell lymphoma with female-specific lethality and TLR pathway therapeutic vulnerabilities"

  Dataset EGAD50000002277

• Genetic_Overlap_between_Metabolic_and_Psychiatric_disease

  The Genetic Overlap between Metabolic and Psychiatric Diseases (GOMAP) study comprises samples from four patient groups: 964 schizophrenia samples, 921 type 2 diabetes patients, 582 patients with comorbid schizophrenia and type 2 diabetes and 280 samples with another psychiatric diagnosis.

  Study EGAS00001002723

• Study of Korean Parkinson's disease

  Single nucleotide variants (SNVs) associated with Parkinson’s disease (PD) have been investigated mainly through genome-wide association studies. Here, we conducted whole genome sequencing of 410 PD patients and 200 healthy individuals of the Korean population and identified disease-related SNVs.

  Study EGAS00001006811

• He et al. WES data

  This dataset are the bam files of WES data from the paper by He et al.

  Dataset EGAD00001007134

• RNA-seq of human glioblastoma and matched gliomasphere cell lines (BLN panel)

  This dataset contains all RNA-seq runs for the BLN panel of cell lines and matched parental tumors. Tumor/cell line pairs have been authenticated using SNP profiles and all pairs were confirmed. Please note: The dataset also contains raw data from an early primary culture (BLN-1) where no stable cell line could be generated. Please also note different reference genomes.

  Dataset EGAD00001002893

• Neuroblastoma WGS samples used for detection of seismic amplification

  Paired-end WGS data of 27 neuroblastoma patient samples (10 obtained at diagnosis, 6 at relapse and 11 matched blood samples as controls) used for detection of complex "seismic" amplification. Mean coverage is 24-55x per sample. The remaining patient samples of the dataset can be found under accession number EGAS00001001308.

  Dataset EGAD00001007807

• RNA-sequencing of T-cell Acute Lymphoblastic Leukemia (T-ALL)

  This dataset contains raw fastq files from the RNA-Seq of 96 T-Acute Lymphoblastic Leukemia. Libraries where prepared using Agilent SureSelect XT-HS2 RNA Reagent Kit. As such, reads contain molecular barcodes that could be specifically handled using the AGeNT tool.

  Dataset EGAD00001010273