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Metadata Public API
Documentation
discovery/metadata/public-metadata-api
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R code
Dataset
EGAD00001007652
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ML modeling data & code
Dataset
EGAD00001009764
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R code
Dataset
EGAD00001007654
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HELIUS DAC
The HELIUS data are owned by the Amsterdam University Medical Centers, location AMC in Amsterdam, The Netherlands. To allow sharing of microbiome data collected in HELIUS with (inter)national researchers, 16s rRNA sequence analysis has been stored at the European genome-phenome archive (EGA; accession code EGAD00001004106). This requires that access needs to be granted, also because the HELIUS data are stored with relevant phenotypical variables. Access is granted to all researchers affiliated with an internationally recognized research institution who request to use the HELIUS data within the EGA context, after having signed the data transfer agreement. Any researcher can request the data by submitting a proposal to the HELIUS Executive Board as outlined at http://www.heliusstudy.nl/en/researchers/collaboration, by email: heliuscoordinator at amsterdamumc dot nl. The HELIUS Executive Board will check proposals if they do not conflict with ethical approvals and informed consent forms of the HELIUS study.
Dac
EGAC00001000895
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HELIUS cohort
Study
EGAS00001002969
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Variables of diversity, clonality, V and J usage and main COVID-19-reactive GLIPH2 frequencies.
Study
EGAS50000000587
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Skin Adenocarcinoma Genome Sequencing
Dataset
EGAD00001001100
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Next-generation sequencing raw data from metastatic prostate cancer biopsies - observational study Vall d'Hebron Institute of Oncology (Ethics committee code PR-AG-5248)
Dac
EGAC50000000448
-
HELIUS cohort gut microbiome batch2
Dataset
EGAD00001009732
-
HELIUS cohort gut microbiome
Dataset
EGAD00001004106
-
A unidirectional histone code in bidirectional promoters across cell types
Study
EGAS00001001656
-
Million Veteran Program (MVP) Summary Results from Non-Sensitive Omics Studies
Study
phs002453
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Butyricicoccus study accession
Dac
EGAC00001001046
-
Human four week embryo head as reference for generating an enhancer compendium for neuronal and neural crest development using neural tube organoids.
Study
EGAS50000001031
-
An atlas of the developing human fetal spine
Dataset
EGAD00001009801
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Data Access Committee for EGA study accession EGAS00001006831
Dac
EGAC00001002988
-
VIB Flemish Gut Flora Project Accession Committee
Dac
EGAC00001000430
-
DAC to control data accession to the Myeloproliferative Neoplasm transcriptome study
Dac
EGAC00001001134
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Methylation profiles in patients with blastic plasmacytoid dendritic cell neoplasm
Study
EGAS00001007201
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Bibliography Statistics
Documentation
about/statistics/bibliography
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Cohort A spatial transcriptomics sequencing
Study
EGAS50000000954
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Cohort B spatial transcriptomics sequencing
Study
EGAS50000000956
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Download Metadata
Documentation
access/download/metadata
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Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity
Study
EGAS00001000878
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Development and Validation of a Prognostic and Predictive 32-Gene Signature for Gastric Cancer
Dataset
EGAD00001008091
-
NHLBI TOPMed - NHGRI CCDG: Early-onset Atrial Fibrillation in the CATHeterization GENetics (CATHGEN) Cohort
Study
phs001600
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Bulk RNA-sequencing datasets from Caco-2 cells under normal or inflamed conditions treated with 4HTBZ or vehicle.
Dataset
EGAD50000001759
-
Genotype data for The admixture histories of Cabo Verde - genotype data
Dataset
EGAD00001008979
-
Maintenance of Genome Sequence Integrity in Long- and Short-lived Rodent Species
Study
phs002610
-
National Cancer Institute (NCI) Prostate Cancer Genome-Wide Association Study for Uncommon Susceptibility Loci (PEGASUS)
Study
phs000882
-
Isala Cross sectional Flow Meta Data
Dataset
EGAD00001009890
-
Functional Multiomics of Cellular Therapy and Immune Checkpoint Blockade Therapy for Solid Tumors
Study
phs002762
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EORTC-26101 sequencing data
Dataset
EGAD00001011160
-
bulk Exome-seq of the 5 HCC patients which also have the single cell T cell RNA-seq data
Dataset
EGAD00001004149
-
scATAC-seq of first and second trimester human gonads - HUGODECA dataset
Dataset
EGAD00001009387
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Submitting array based metadata
Documentation
submission/metadata/submission/array
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Immune Profiling in Patients with High-Risk Smoldering Myeloma
Study
phs002476
-
Modulation of Lung Immune Responses to Viral Infection-Microbiome Interactions with Respiratory Organoids
Study
phs003627
-
National Eye Institute (NEI) Age-Related Eye Disease Study 2 (AREDS2)
Study
phs002015
-
bulk RNA-seq of the 5 HCC patients which also have the single cell T cell RNA-seq data
Dataset
EGAD00001004148
-
snRNA-seq/snATAC-seq multiome of first and second trimester human gonads - HUGODECA dataset
Dataset
EGAD00001009388
-
Genetic and epigenetic characterization of adenoid cystic carcinoma
Dataset
EGAD00001001662
-
RNA sequencing from patient-derived intestinal organoids
Dataset
EGAD50000000492
-
Orofacial Pain: Prospective Evaluation and Risk Assessment (OPPERA)
Study
phs000761
-
Prognostic whole-genome and transcriptome signatures in colorectal cancers
Dataset
EGAD50000000169
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National Heart, Lung, and Blood Institute (NHLBI) Bench to Bassinet Program: The Pediatric Cardiac Genetics Consortium (PCGC) Study
Study
phs001194
-
Inherited chromosomally-integrated human herpesvirus 6A/B (HHV-6A/B) genome sequences in the Japanese population
Study
JGAS000240
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scRNA-seq of first and second trimester human gonads - HUGODECA dataset
Dataset
EGAD00001009386
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Single-cell transcriptomic data from tumor samples
Study
EGAS50000001038
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eIMPACT Trial: Modernized Collaborative Care to Reduce the Excess CVD Risk of Older Depressed Patients
Study
phs003283
-
Breast Cancer Risk Pathways
Study
phs001044
-
DNA Methylation age and mortality in the Lothian Birth Cohorts of 1921 and 1936
Study
phs000821
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Neuroblastoma WGS samples used for detection of seismic amplification
Dataset
EGAD00001007807
-
scRNAseq of patients with chronic graft-versus-host-disease
Dataset
EGAD00001012121
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RRBS analysis to characterize the epigenomic conservation between species in the context of Aging and Cancer.
Dataset
EGAD00001006650
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Presentation and relapse myeloma
Dataset
EGAD00001004846
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Psoriasis Patient PBMC scRNA-seq data
Dataset
EGAD50000001102
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The PRIME-AIR Study: Positive End-Expiratory Pressure, Recruitment, Incentive Spirometry, Muscle Relaxant Optimization, Preoperative Education, Postoperative Early Ambulation, Individualized, and Reinforced
Study
phs003926
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Single-cell profiling of the leukemic and non-leukemic immune cell compartments in CD8+ T-cell Large Granular Lymphocytic Leukemia
Study
EGAS00001005297
-
Neuroblastoma WGS samples used for analysis of telomeric sequences
Dataset
EGAD00001009289
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Pervasive H3K27 acetylation and ERV expression in H3.3K27M gliomas present a therapeutic vulnerability
Dataset
EGAD00001004961
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Accelerating Medicines Partnership-Systemic Lupus Erythematosus (AMP-RA/SLE)
Study
phs001459
-
Accelerating Medicines Partnership-Rheumatoid Arthritis (AMP-RA/SLE)
Study
phs001457
-
Beta-Blocker Evaluation in Survival Trial (BEST-BioLINCC)
Study
phs003730
-
Prospective Investigation of Pulmonary Embolism Diagnosis (PIOPED-BioLINCC)
Study
phs004020
-
Data access policy
Dac
EGAC50000000504
-
Fine Mapping of Eight Psoriasis Susceptibility Loci
Study
phs001298
-
Regulatory Genomics of Human Embryonic Development
Study
phs001226
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Human Liver Cohort (HLC)
Study
phs000253
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Metastatic Colorectal Adenocarcinoma Tumor Purity Assessment from Whole Exome Sequencing Data
Study
phs003059
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High-grade B-cell lymphoma, not otherwise specified: an LLMPP study
Study
EGAS50000000932
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NHLBI TOPMed: Genomic Summary Results for the Trans-Omics for Precision Medicine Program
Study
phs001974
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An integrated single-cell reference atlas of the human endometrium
Dataset
EGAD00001015446
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Adoptive Cell Therapy of Autologous T cell Receptor-Engineered T Cells Targeting the p53 Neoantigens in Human Solid Tumors
Study
phs002928
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Altered Interactions between Circulating and Tissue-Resident CD8 T Cells with the Colonic Mucosa Define Checkpoint Inhibitor Colitis
Study
phs003418
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HiDEF-seq Single-Molecule Sequencing of Single-Strand Mismatches and Damage
Study
phs003604
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Acute Respiratory Distress Network (ARDSNet) Study 02 Late Steroid Rescue Study (LaSRS) (ARDSNet-LaSRS-BioLINCC)
Study
phs003769
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Functional and genomic heterogeneity of long-term self-renewing compartment as the origin of treatment resistance in pancreatic tumors
Study
EGAS00001003442
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NHLBI TOPMed: San Antonio Family Heart Study (SAFHS)
Study
phs001215
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Integrated Analysis of Multimodal Single-Cell Data
Study
phs002315
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KRT17High/CXCL8+ Tumor Cells Display Both Classical and Basal Features and Regulate Myeloid Infiltration in the Pancreatic Cancer Microenvironment
Study
phs003436
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Adipocytes Regulate Fibroblast Function and Their Loss Contributes to Fibroblast Dysfunction in Inflammatory Diseases
Study
phs003304
-
Gut microbiome modulates response to anti PD1 immunotherapy in metastatic melanoma patients
Study
EGAS00001002698
-
NHLBI TOPMed - NHGRI CCDG: Atherosclerosis Risk in Communities (ARIC)
Study
phs001211
-
dbGaP Collection: NHLBI Heart Failure Related dbGaP Data (No IRB requirement)
Study
phs001991
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Fixed single-cell transcriptomic characterization of human radial glial diversity
Study
phs001016
-
OMRF SLEGEN GWAS Data from European-American Women with Lupus
Study
phs000202
-
Immune Responses in Checkpoint Myocarditis Across Heart, Blood, and Tumor
Study
phs003413
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Clinical Study of Intermittent Positive Pressure Breathing (IPPB-BioLINCC)
Study
phs004010
-
Single-cell gene expression data from CD8+ T cells from two Austrian COVID19 patients stimulated with wildtype and mutant SARS-Cov-2 peptides
Dataset
EGAD00001006995
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Data Use Ontology (DUO)
Documentation
access/data-access-committee/data-use-ontology
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International Consortium on the Genetics of Systemic Lupus Erythematosus (SLEGEN)
Study
phs000216
-
Evaluation Study of Congestive Heart Failure and Pulmonary Artery Catheterization Effectiveness (ESCAPE-BioLINCC)
Study
phs003782
-
Alpha1-Antitrypsin Deficiency Registry (AADR-BioLINCC)
Study
phs004187
-
Genetic and epigenetic characterization of adenoid cystic carcinoma
Study
EGAS00001001457
-
GCAT | Genomes for life
Blog
gcat-genomes-for-life
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Center for Craniofacial and Dental Genetics: Study of Dental Caries and Cleft Lip/Palate in Guatemala
Study
phs000440
-
CIDR, NCI, NIDA Sequencing of Targeted Genomic Regions Associated with Smoking
Study
phs000813
-
Non-Coding Autoimmune Risk Variant Defines Role for ICOS in T Peripheral Helper Cell Development
Study
phs003448